View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_low_24 (Length: 308)

Name: NF4270_low_24
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_low_24
NF4270_low_24
[»] chr4 (5 HSPs)
chr4 (1-305)||(9082801-9083105)
chr4 (141-190)||(22250168-22250217)
chr4 (153-225)||(2171741-2171814)
chr4 (141-213)||(25318989-25319062)
chr4 (95-191)||(20712546-20712642)
[»] scaffold0393 (1 HSPs)
scaffold0393 (153-227)||(12363-12438)
[»] chr7 (1 HSPs)
chr7 (122-232)||(45369085-45369196)
[»] chr5 (3 HSPs)
chr5 (102-208)||(9952693-9952800)
chr5 (95-208)||(10161722-10161836)
chr5 (143-229)||(10898666-10898753)
[»] chr1 (4 HSPs)
chr1 (153-224)||(48635251-48635322)
chr1 (196-232)||(41516985-41517021)
chr1 (95-188)||(18325187-18325280)
chr1 (117-189)||(15452404-15452476)
[»] chr6 (1 HSPs)
chr6 (95-232)||(29240503-29240641)
[»] chr8 (3 HSPs)
chr8 (124-223)||(5997343-5997443)
chr8 (122-232)||(11038105-11038216)
chr8 (144-232)||(23979277-23979367)
[»] chr2 (2 HSPs)
chr2 (176-232)||(1101980-1102037)
chr2 (157-232)||(11510911-11510987)
[»] chr3 (2 HSPs)
chr3 (144-188)||(2410026-2410070)
chr3 (95-191)||(3845205-3845301)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 9083105 - 9082801
Alignment:
Q  1 ttgaattcttaccttttggttttcttttcatttgactgtgtagtgttctttttagattctcatgtaacgtatagcatgttctagatattgattaatgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9083105 ttgaattcttaccttttggttttcttttcatttgactgtgtagtgttctttttagattctcatgtaacgtatagcatgttctagatattgattaatgttt 9083006  T
Q  101 ggttccacttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcccctgaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9083005 ggttccacttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcccctgaattg 9082906  T
Q  201 attctaacttgaacttagaatttggagttttttcctagaatttactattcaacctacttttacttgaacatatccaaacaaaatcgctctacgttcatct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9082905 attctaacttgaacttagaatttggagttttttcctagaatttactattcaacctacttttacttgaacatatccaaacaaaatcgctctacgttcaact 9082806  T
Q  301 cactc 305  Q
    |||||    
T  9082805 cactc 9082801  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 22250168 - 22250217
Alignment:
Q  141 tagaattaattctgacatgtttggatgttctgaaatagaattgattttgc 190  Q
    ||||||| |||||||||||||||| |||||| || |||||||||||||||    
T  22250168 tagaattcattctgacatgtttggttgttctcaattagaattgattttgc 22250217  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 2171741 - 2171814
Alignment:
Q  153 tgacatgtttggatgttctgaaatagaattgattttg-cccctgaattgattctaacttgaacttagaatttgg 225  Q
    |||||||||||||||||||  | || |||||| |||| |||| |||||||||| ||||||||  ||||||||||    
T  2171741 tgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttgaagctagaatttgg 2171814  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 25318989 - 25319062
Alignment:
Q  141 tagaattaattctgacatgtttggatgttctgaaatagaattgattttg-cccctgaattgattctaacttgaa 213  Q
    ||||||| ||| |||||||||||| || |||  | |||||||||||||| | || |||||||||||||||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaa 25319062  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 20712546 - 20712642
Alignment:
Q  95 atgtttggttccacttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcc 191  Q
    |||||||||||||||| |||| || | ||||||||||  ||| |  ||||||| ||| | ||||| |||  || ||| |||||||||||||||||||    
T  20712546 atgtttggttccacttatggaagaggcaaaattgattctagaggtttagaattgatttttacatgcttgtttgctctcaaatagaattgattttgcc 20712642  T

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Target: scaffold0393 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 12438 - 12363
Alignment:
Q  153 tgacatgtttggatgttctgaaatagaattgattttgcc-cctgaattgattctaacttgaacttagaatttggag 227  Q
    ||||||||||||||||||| || |||||||||||||||| || ||| |||||||||||||||  || |||||||||    
T  12438 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 12363  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 45369085 - 45369196
Alignment:
Q  122 aaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcccct-gaattgattctaacttgaacttagaa 220  Q
    ||||||||||||||| |  |||| || ||| ||| ||||||||||||||| || |||||||||||||||  || ||||||||| |||||||||  |||||    
T  45369085 aaaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaa 45369184  T
Q  221 tttggagttttt 232  Q
    || |||| ||||    
T  45369185 ttcggagctttt 45369196  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 9952800 - 9952693
Alignment:
Q  102 gttccacttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcccct-gaattg 200  Q
    |||||| |||||||||| | ||||||||||||| | |  ||||||| ||| ||||||||||| |||||||   | ||||| ||||||||| || ||||||    
T  9952800 gttccatttctggaggaggcaaaattgatttcataggtgtagaatttattttgacatgtttgaatgttctctgacagaatagattttgcctctagaattg 9952701  T
Q  201 attctaac 208  Q
    ||||||||    
T  9952700 attctaac 9952693  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 10161722 - 10161836
Alignment:
Q  95 atgtttggttccac-ttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcccc 193  Q
    |||||||||||||| |||||| ||||| ||||||||||  |||||  ||||||| ||  |||||||||||  ||||||  ||||||||||| |||||| |    
T  10161722 atgtttggttccactttctgg-ggaagtaaaattgattctagatgtgtagaattgatcttgacatgtttgattgttctcgaatagaattgactttgcctc 10161820  T
Q  194 t-gaattgattctaac 208  Q
    | ||||||||||||||    
T  10161821 tagaattgattctaac 10161836  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 10898666 - 10898753
Alignment:
Q  143 gaattaattctgacatgtttggatgttctgaaatagaattgattttgcccct-gaattgattctaacttgaacttagaatttggagtt 229  Q
    ||||||||| |||||||||||| || |||  | || ||||||||||||| || ||||||||||||||||||| | |||| ||||||||    
T  10898666 gaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttgaagtaagaaattggagtt 10898753  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 48635322 - 48635251
Alignment:
Q  153 tgacatgtttggatgttctgaaatagaattgattttgcccctgaattgattctaacttgaacttagaatttg 224  Q
    ||||||||||||||||||| || |||||||| ||||||| |  ||||||||||||||| | | |||||||||    
T  48635322 tgacatgtttggatgttctcaagtagaattggttttgcctcataattgattctaacttcagcctagaatttg 48635251  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 41516985 - 41517021
Alignment:
Q  196 aattgattctaacttgaacttagaatttggagttttt 232  Q
    |||||||||||||||||| ||||||||||||||||||    
T  41516985 aattgattctaacttgaagttagaatttggagttttt 41517021  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 18325280 - 18325187
Alignment:
Q  95 atgtttggttccacttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgatttt 188  Q
    ||||||| |||||||| |||||||   |||| ||||| ||||||   |||||| ||| |||||||||||||| ||||  | |||||||||||||    
T  18325280 atgtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgatttt 18325187  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 15452404 - 15452476
Alignment:
Q  117 gaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttg 189  Q
    |||| |||| |||||||| ||| ||| |||| ||| |||||| ||||||||||||  | ||||||||||||||    
T  15452404 gaagcaaaactgatttcacatgtataaaattgattttgacatctttggatgttctcgagtagaattgattttg 15452476  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 29240641 - 29240503
Alignment:
Q  95 atgtttggttccacttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcc-cc 193  Q
    |||||||||||||||| ||| ||||  ||||||||||  ||| |  || |||| ||| ||||||||| |||| || | || ||||||||||||| || ||    
T  29240641 atgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgattttacctcc 29240542  T
Q  194 tgaattgattctaacttgaacttagaatttggagttttt 232  Q
     || ||||||||||||||||  || |||||| |||||||    
T  29240541 agagttgattctaacttgaagctaaaatttgaagttttt 29240503  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 5997443 - 5997343
Alignment:
Q  124 aattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcccct-gaattgattctaacttgaacttagaatt 222  Q
    ||||||||| ||| || ||| ||| ||| ||||||||||||||||| |  | || ||||||||||||| ||  || ||||||||||||||| ||||||||    
T  5997443 aattgattttagaggcgtaggattgattttgacatgtttggatgtttttgagtaaaattgattttgcctctaaaagtgattctaacttgaagttagaatt 5997344  T
Q  223 t 223  Q
    |    
T  5997343 t 5997343  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 11038105 - 11038216
Alignment:
Q  122 aaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcc-cctgaattgattctaacttgaacttagaa 220  Q
    ||||||||||  ||| | ||| |||| ||| |||||||||||||||||||  ||| || |||||||| || || || ||||||||||||||||  || ||    
T  11038105 aaaattgattctagaggtatataattgattttgacatgtttggatgttctcgaatggagttgatttttcctccagagttgattctaacttgaagctaaaa 11038204  T
Q  221 tttggagttttt 232  Q
    ||||||| ||||    
T  11038205 tttggaggtttt 11038216  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 23979277 - 23979367
Alignment:
Q  144 aattaattctgacatgtttggatgttc-tga-aatagaattgattttgcccctgaattgattctaacttgaacttagaatttggagttttt 232  Q
    |||||||| | |||||||||||||||| ||| |||| |||||||||| | ||  ||||||||| ||||| || ||||||||| ||||||||    
T  23979277 aattaattttaacatgtttggatgttcttgagaatataattgattttcctccacaattgattccaacttaaagttagaatttagagttttt 23979367  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 1101980 - 1102037
Alignment:
Q  176 tagaattgattttgcc-cctgaattgattctaacttgaacttagaatttggagttttt 232  Q
    |||||||||||||||| ||||| ||||||||||||| ||  |||||||||| ||||||    
T  1101980 tagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgttttt 1102037  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 11510911 - 11510987
Alignment:
Q  157 atgtttggatgttctgaaatagaattgattttgcc-cctgaattgattctaacttgaacttagaatttggagttttt 232  Q
    ||||||||||||| |  | |||||||||||||||| ||  | ||||||||| ||||||  |||||||||||||||||    
T  11510911 atgtttggatgttttcgagtagaattgattttgcctccatatttgattctatcttgaagctagaatttggagttttt 11510987  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 2410070 - 2410026
Alignment:
Q  144 aattaattctgacatgtttggatgttctgaaatagaattgatttt 188  Q
    |||| ||| ||||||||||||||||||| || |||||||||||||    
T  2410070 aatttattttgacatgtttggatgttctcaagtagaattgatttt 2410026  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 3845301 - 3845205
Alignment:
Q  95 atgtttggttccacttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttgcc 191  Q
    |||||||||||||||| ||||| ||  ||||||||||  ||| |  ||||||| ||| |||||||||||  || ||| || ||||||||||| ||||    
T  3845301 atgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgattctgcc 3845205  T

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