View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_25 (Length: 295)
Name: NF4270_low_25
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 46486935 - 46486668
Alignment:
| Q |
12 |
gagatgaactagaatacatgtgcattgcatgggtgatttagagaaattagtggaggatggaatagaatttacgttggtcggcctcaattaaaaagatgaa |
111 |
Q |
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| T |
46486935 |
gagaagaactagaatacatgtgcattgcatgggtgatatagagaaattagtggaggatggaatagaatttacgttggtcggcctcaattaaaaagatgaa |
46486836 |
T |
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| Q |
112 |
cttgtaaagaaaaaagccacactaattcaagtgtgttgctcaagactcgaattttgaacattatacgttcaaataattcttgacttaccattattgtata |
211 |
Q |
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| T |
46486835 |
cttgtaaagaaaaaagccacactaattcaagtgtgttgctcaagactcgaattttgaacattatacgttcaaataattcttgacttaccattattgtata |
46486736 |
T |
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| Q |
212 |
gtttttgtcaccatgaaataaactacctacatcaaacatcattgtccctaaaattctgcactactaaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46486735 |
gtttttgtcaccatgaaataaactacctacatcaaacatcattgtccctataattctgcactactaaa |
46486668 |
T |
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