View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_26 (Length: 295)
Name: NF4270_low_26
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 49094303 - 49094567
Alignment:
| Q |
18 |
caaggatggtaattatcaatttgcgtacttagttttaagcactaaggttgtggattttaatgttctcaagtgtaagaaaaaggtctttgttcctagcctg |
117 |
Q |
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| T |
49094303 |
caaggatggtaattatcaatttgcgtacttagttttaagcactaaggttgtggattttgatgttctcaagtgtaagaaaaaggtctttgttcctagcctg |
49094402 |
T |
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| Q |
118 |
aatacttcttcattcacaagcaaacttactttagagcagggatttgagattagctagagtggtgtggatgatgaagagaaatgtcacgactgtatgaaat |
217 |
Q |
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| T |
49094403 |
aatacttc---attcacaaacaaacttactttagagaagggatttgagattagctagagtggtgtggatgatgaagagaaatgtcacgactgcatgaaat |
49094499 |
T |
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| Q |
218 |
ctggtggaagatgtggattcaatgtatctgcaaatgaagttatgtgcatctcctctatgcaatctctg |
285 |
Q |
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| T |
49094500 |
ctggtggaagatgtggattcaatgtatctgcaaatgaagttatgtgcatctcctctatgcaatctctg |
49094567 |
T |
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