View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_29 (Length: 274)
Name: NF4270_low_29
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 7754683 - 7754922
Alignment:
| Q |
20 |
tattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgatttagctcttcgagtttatatggt |
119 |
Q |
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| T |
7754683 |
tattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgatttagctcttcgagtttatatggt |
7754782 |
T |
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| Q |
120 |
ttaattttaacatcatgcttatgtagaatatctatatctcttgtagttataatgataatgctaccagaattaaaccaatcatgtcctccagcaagtgatt |
219 |
Q |
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| T |
7754783 |
ttaattttaacatcatgcttatgtagaatatctatatctcttgtagttataatgataatgctaccagaattaaaccaatcatgtcctccagcaagtgatt |
7754882 |
T |
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| Q |
220 |
ccaattgttttacagaatcaacatcatccagtatcagaag |
259 |
Q |
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| T |
7754883 |
ccaattgttttacagaatcaacatcatccagtatcagaag |
7754922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 7838200 - 7838438
Alignment:
| Q |
21 |
attttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgatttagctcttcgagtttatatggtt |
120 |
Q |
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|||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||| || |
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| T |
7838200 |
atttttgcaaagttttctgcaggtctgctcatattaaaggcatacatacaaaagagttcaatggattcatgattatttagctcttcgagtttgtatgttt |
7838299 |
T |
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| Q |
121 |
taattttaacatcatgcttatgtagaatatctatatctcttgtagttataatgataatgctaccagaattaaaccaatcatgtcctccagcaagtgattc |
220 |
Q |
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| T |
7838300 |
taattttaacatcatgcttatgtagaacatctatatctcttgttgttacaatgattctgctaccagaaccaaaccaatcatgtcctccagctaatgattt |
7838399 |
T |
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| Q |
221 |
caattgttttacagaatcaacatcatccagtatcagaag |
259 |
Q |
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| T |
7838400 |
caattgttttactgaatcaacatcatccagtatgagaag |
7838438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 7761783 - 7762027
Alignment:
| Q |
21 |
attttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgatttagctcttcgagtttatatggtt |
120 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| || |
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| T |
7761783 |
attttttcaaagttttctacaggtctactcatattaaaggcataccaacagaagagttcagtggattcatgatgatttagctcttcaaatttatatgttt |
7761882 |
T |
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| Q |
121 |
taattttaacatc------atgcttatgtagaatatctatatctcttgtagttataatgataatgctaccagaattaaaccaatcatgtcctccagcaag |
214 |
Q |
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| T |
7761883 |
tgattttaatatcatgcttatgcttatgtagaacatcgatatctcttgttgttacaatgacaatgctaccagaaccaaaccaatcttgtcctccagctaa |
7761982 |
T |
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| Q |
215 |
tgattccaattgttttacagaatcaacatcatccagtatcagaag |
259 |
Q |
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| T |
7761983 |
tgattccaattgttttaccgaatcaacatcatcgagtatcagaag |
7762027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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