View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_34 (Length: 253)
Name: NF4270_low_34
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 8264535 - 8264453
Alignment:
| Q |
101 |
aaccgatggacaatcaaattgtaacattataattttcccctcaacactatcatacgggtaaaatatagtatacaaagtccataacatgtttcctc |
195 |
Q |
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| T |
8264535 |
aaccgatggacaatcaaattgtaatattataattttcccctcaa------------agtaaaatatagtatacaaagtccataacatgtttcctc |
8264453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 8265746 - 8265701
Alignment:
| Q |
12 |
atgaaggtcaatttgaaaggaaaacatgttgataaacatcaccccc |
57 |
Q |
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| T |
8265746 |
atgaaggtcaatttgaaaggaaaacatgttgataaacattaccccc |
8265701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 8264436 - 8264399
Alignment:
| Q |
216 |
gtccataacatgtttgaaggcacattcttatagggttg |
253 |
Q |
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| T |
8264436 |
gtccataacatgtttgaaggcacattcttatagggttg |
8264399 |
T |
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