View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_low_54 (Length: 210)

Name: NF4270_low_54
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_low_54
NF4270_low_54
[»] chr3 (4 HSPs)
chr3 (24-195)||(43102826-43102997)
chr3 (37-162)||(13077411-13077536)
chr3 (48-162)||(47807377-47807490)
chr3 (37-162)||(51825062-51825187)
[»] chr2 (2 HSPs)
chr2 (37-191)||(42027734-42027888)
chr2 (112-191)||(34040172-34040251)
[»] chr5 (2 HSPs)
chr5 (37-162)||(10085299-10085423)
chr5 (48-107)||(1663984-1664043)
[»] chr7 (1 HSPs)
chr7 (37-162)||(19278884-19279009)
[»] chr1 (1 HSPs)
chr1 (37-162)||(3978763-3978886)
[»] chr4 (2 HSPs)
chr4 (37-83)||(3217138-3217184)
chr4 (37-108)||(26789057-26789129)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 43102997 - 43102826
Alignment:
Q  24 tgaactactctcatcttccccataatgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccaccacatcggaaactact 123  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| | |||||||||| |    
T  43102997 tgaactactctcatcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttcaccgacgatcaccgcgtcggaaactagt 43102898  T
Q  124 gcgaccccgccggcgaccaccgcttaatttctgcaaaaatttatgaaccatggaaaaacaacacagtgttgc 195  Q
    |||||| |||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43102897 gcgacctcgccggcgaccactacttaatttctgcaaaaacttatgaaccatggaaaaacaacacagtgttgc 43102826  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 13077536 - 13077411
Alignment:
Q  37 tcttccccataatgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccaccacatcggaaactactgcgaccccgccgg 136  Q
    |||||||||| |||||||||||||||||  || |||||||||||||||  | ||||||||||| |||||||| || |||||||  |||| |||  | |||    
T  13077536 tcttccccatcatgtctgcaacaaaacccatatatttattttgggatcggagaactttcaccggcgaccaccgcaccggaaaccgctgcaaccgtgtcgg 13077437  T
Q  137 cgaccaccgcttaatttctgcaaaaa 162  Q
    |||||| ||| |||||||||||||||    
T  13077436 cgaccaacgcataatttctgcaaaaa 13077411  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 47807377 - 47807490
Alignment:
Q  48 atgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccaccacatcggaaactactgcgaccccgccggcgaccaccgct 147  Q
    |||||||||||||||||  || ||||||||||||||| || ||||||| ||| |||||||| |  |||||||| |||| ||| ||||||| |||||||||    
T  47807377 atgtctgcaacaaaacccgtatatttattttgggatcgaagaactttcgccggcgaccaccgcgccggaaactgctgcaaccgcgccggc-accaccgct 47807475  T
Q  148 taatttctgcaaaaa 162  Q
    |||||| ||||||||    
T  47807476 taatttatgcaaaaa 47807490  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 51825187 - 51825062
Alignment:
Q  37 tcttccccataatgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccaccacatcggaaactactgcgaccccgccgg 136  Q
    |||||| ||| ||||||||||||||||| ||| |||||||||||| || || || ||||| || |||||||| || ||||||||| ||| ||  || | |    
T  51825187 tcttcctcattatgtctgcaacaaaacccctatatttattttggggtcgaagaaatttcatcggcgaccaccgcaccggaaactattgcaactgcgtcag 51825088  T
Q  137 cgaccaccgcttaatttctgcaaaaa 162  Q
     |||||||||||||||| ||||||||    
T  51825087 tgaccaccgcttaatttatgcaaaaa 51825062  T

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Target: chr2 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 42027734 - 42027888
Alignment:
Q  37 tcttccccataatgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccaccacatcggaaactactgcgaccccgccgg 136  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  42027734 tcttccccataatgtctgcaacaaaatccctaaatttattttgggatcgaaaaactttcaccgacgaccaccgcgtcggaaactactacgaccccgccgg 42027833  T
Q  137 cgaccaccgcttaatttctgcaaaaatttatgaaccatggaaaaacaacacagtg 191  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42027834 cgaccaccgcttaatttctgcaaaaacttatgaaccatggaaaaacaacacagtg 42027888  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 34040251 - 34040172
Alignment:
Q  112 tcggaaactactgcgaccccgccggcgaccaccgcttaatttctgcaaaaatttatgaaccatggaaaaacaacacagtg 191  Q
    |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34040251 tcggaaactattgcgaccccgccggcaacctccgcttaatttctgcaaaaatttatgaaccatggaaaaacaacacagtg 34040172  T

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Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 10085423 - 10085299
Alignment:
Q  37 tcttccccataatgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccaccacatcggaaactactgcgaccccgccgg 136  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||| | ||||||||||| ||||||| ||  |||||||| |||| ||| ||||||    
T  10085423 tcttccccatgatgtctgcaacaaaacc-ctatatttattttgggatcagagaactttcaccggcgaccactacgccggaaactgctgcaaccacgccgg 10085325  T
Q  137 cgaccaccgcttaatttctgcaaaaa 162  Q
     ||||| |||||||||||||||||||    
T  10085324 tgaccatcgcttaatttctgcaaaaa 10085299  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 1664043 - 1663984
Alignment:
Q  48 atgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccac 107  Q
    ||||||||||||||||| ||| ||||||||||||||| || ||||||| ||| |||||||    
T  1664043 atgtctgcaacaaaacccctatatttattttgggatcgaagaactttcgccggcgaccac 1663984  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 19278884 - 19279009
Alignment:
Q  37 tcttccccataatgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccaccacatcggaaactactgcgaccccgccgg 136  Q
    |||| ||||| ||||||||||||||||  ||| || |||||||||||   | ||||||||||| ||||||||    |||||||  || | ||| ||||||    
T  19278884 tcttacccatgatgtctgcaacaaaactcctacatctattttgggattggagaactttcaccggcgaccaccgtgccggaaaccgctacaaccgcgccgg 19278983  T
Q  137 cgaccaccgcttaatttctgcaaaaa 162  Q
     ||||||| |||||||||||||||||    
T  19278984 tgaccaccacttaatttctgcaaaaa 19279009  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 3978886 - 3978763
Alignment:
Q  37 tcttccccataatgtctgcaacaaaacctctaaatttattttgggatcaaaaaactttcaccgacgaccaccacatcggaaactactgcgaccccgccgg 136  Q
    |||| ||||| ||||||||||||||||| ||| || |||||||||||   | ||||||||||| ||||||||    |||||||  |||| ||| ||||||    
T  3978886 tcttacccatgatgtctgcaacaaaacccctacatctattttgggat-ggagaactttcaccg-cgaccaccgtgccggaaaccgctgcaaccacgccgg 3978789  T
Q  137 cgaccaccgcttaatttctgcaaaaa 162  Q
     ||||||| |||||||||||||||||    
T  3978788 tgaccaccacttaatttctgcaaaaa 3978763  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 3217184 - 3217138
Alignment:
Q  37 tcttccccataatgtctgcaacaaaacctctaaatttattttgggat 83  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  3217184 tcttccccataatgtttgcaacaaaacccctatatttattttgggat 3217138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 26789057 - 26789129
Alignment:
Q  37 tcttccccataatgtctgcaacaaaacctctaaattta-ttttgggatcaaaaaactttcaccgacgaccacc 108  Q
    ||||| |||| ||||||||||||||||| ||| ||||| ||||||||||  | |||||||| |||||||||||    
T  26789057 tcttctccattatgtctgcaacaaaacccctatatttatttttgggatcggataactttcatcgacgaccacc 26789129  T

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