View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4271-Insertion-8 (Length: 52)

Name: NF4271-Insertion-8
Description: NF4271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4271-Insertion-8
NF4271-Insertion-8
[»] chr5 (7 HSPs)
chr5 (1-52)||(1033408-1033459)
chr5 (3-46)||(1071147-1071190)
chr5 (3-50)||(1043802-1043849)
chr5 (3-46)||(1058344-1058387)
chr5 (3-46)||(1065408-1065451)
chr5 (3-46)||(1046348-1046391)
chr5 (3-46)||(1053008-1053051)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-19
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1033408 - 1033459
Alignment:
Q  1 taaatgacttcagactcgccgcaagaaatgctattgaagctggtaagtttgt 52  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1033408 taaatgacttcagactcgctgcaagaaatgctattgaagctggtaagtttgt 1033459  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 1071147 - 1071190
Alignment:
Q  3 aatgacttcagactcgccgcaagaaatgctattgaagctggtaa 46  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  1071147 aatgacttcagactcgctgcaagaaatgctattgaagctggtaa 1071190  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 1043802 - 1043849
Alignment:
Q  3 aatgacttcagactcgccgcaagaaatgctattgaagctggtaagttt 50  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||||    
T  1043802 aatgatttcagacttgctgcaagaaatgctattgaagctggtaagttt 1043849  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 1058344 - 1058387
Alignment:
Q  3 aatgacttcagactcgccgcaagaaatgctattgaagctggtaa 46  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  1058344 aatgacttcagacttgctgcaagaaatgctattgaagctggtaa 1058387  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 1065408 - 1065451
Alignment:
Q  3 aatgacttcagactcgccgcaagaaatgctattgaagctggtaa 46  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  1065408 aatgacttcagacttgctgcaagaaatgctattgaagctggtaa 1065451  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 1046348 - 1046391
Alignment:
Q  3 aatgacttcagactcgccgcaagaaatgctattgaagctggtaa 46  Q
    |||||||| ||||| || ||||||||||||||||||||||||||    
T  1046348 aatgactttagacttgctgcaagaaatgctattgaagctggtaa 1046391  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 1053008 - 1053051
Alignment:
Q  3 aatgacttcagactcgccgcaagaaatgctattgaagctggtaa 46  Q
    |||||||| ||||| || ||||||||||||||||||||||||||    
T  1053008 aatgactttagacttgctgcaagaaatgctattgaagctggtaa 1053051  T

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