View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4271_high_2 (Length: 336)
Name: NF4271_high_2
Description: NF4271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4271_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 26845835 - 26845526
Alignment:
| Q |
11 |
cagagagaacagctaagatttggtcagagatgagtatttagtgtgttatctgactttcagaaaaatttggatgagtgccattacaagacctatttatttt |
110 |
Q |
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| T |
26845835 |
cagagagaacagctaagatttggtcagagatgagtatttagtgtgttatctgactttcagaaaaatttggatgagtgccattacaagacctatttatttt |
26845736 |
T |
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| Q |
111 |
ctgactctctccatgtgtgattctctttctatgagtaaagagggagtgagcaagttggttctgagggttattgctctgtttatttatagtgaaagctttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845735 |
ctgactctctccatgtgtgattctctttctatgagtaaagagggagtgagcaagttggttctgagggttattgctctgtttatttatagtgaaagctttc |
26845636 |
T |
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| Q |
211 |
acactctctgtgattttgtctcagcttgtttgaagcatgatcatctgtcatctttattatattcaaatgccacggttttacttttatttatgatgggtga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845635 |
acactctctgtgattttgtctcagcttgtttgaagcatgatcatctgtcatctttattatattcaaatgccacggttttacttttatttatgatgggtga |
26845536 |
T |
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| Q |
311 |
tgggtgaagt |
320 |
Q |
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|||||||||| |
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| T |
26845535 |
tgggtgaagt |
26845526 |
T |
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