View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4271_high_3 (Length: 305)
Name: NF4271_high_3
Description: NF4271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4271_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 26845950 - 26846246
Alignment:
| Q |
1 |
cggctcacattgcacctttcctacattaaatttggaatctaaatcccataattcttttgtccccatccccactttgccttcaaaacaaaacccaaatctc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845950 |
cggctcacattgcacctttcctacattaactttggaatctaaatcccataattcttttgtccccatccccactttgccttcaaaacaaaacccaaatctc |
26846049 |
T |
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| Q |
101 |
caaaacgctcaaaagtaaggagatgaagatccagtgtgatgcatgtcacaaacaagaggcctccttgttttgccctgcagatgaagcagctctctgcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26846050 |
caaaacgctcaaaagtaaggagatgaagatccagtgtgatgcatgtcacaaacaagaggcctccttgttttgccctgcagatgaagcagctctctgcaat |
26846149 |
T |
|
| Q |
201 |
caatgtgatcgcaatatccactatgccaacaaggtctctgctaaacacaaacgcttcactcttcaccaccccacttccaaagacactcctctctgtg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26846150 |
caatgtgatcgcaatatccactatgccaacaaggtctctgctaaacacaaacgcttcactcttcaccaccccacttccaaagacacccctctctgtg |
26846246 |
T |
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