View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4271_high_4 (Length: 219)
Name: NF4271_high_4
Description: NF4271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4271_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 40457714 - 40457921
Alignment:
| Q |
1 |
cttcatcaccaccactctctgctgatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40457714 |
cttcatcaccaccactctctgctgatacacaaacattctttaatttaaagatgatgaagaagcatgtggatccatcttggcttacactctcacagccatc |
40457813 |
T |
|
| Q |
101 |
ttcatcaccaccactccataagcctttaccatctgaatacacaccatcatcaccccctaggcctccaccatttgaatatacaccattaacaccccctaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| | ||| |
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| T |
40457814 |
ttcatcaccaccactccataagcctttaccatctgaatacacaccatcatcaccccctagacctccaccatttgaatacacgccattaacaccctccaca |
40457913 |
T |
|
| Q |
201 |
cgccctat |
208 |
Q |
| |
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|||||||| |
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| T |
40457914 |
cgccctat |
40457921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 40280622 - 40280429
Alignment:
| Q |
15 |
ctctctgctgatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatcttcatcaccaccac |
114 |
Q |
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||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40280622 |
ctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggcttacactctcacagccatcttcatcaccaccac |
40280523 |
T |
|
| Q |
115 |
tccataagcctttaccatctgaatacacaccatcatcaccccctaggcctccaccatttgaatatacaccattaacaccccctacacgccctat |
208 |
Q |
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| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||| |
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| T |
40280522 |
ttcctaagcctttcccatctgaatggacaccatcatcaccccctaggcctccaccatttgaatacacgccattaacaccctccacacgccctat |
40280429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 40280794 - 40280654
Alignment:
| Q |
15 |
ctctctgctgatacacaaacattctttaatttaaagatgatgaagaagcatgtggattcatcttggcttacactctcacagccatcttcatcaccaccac |
114 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40280794 |
ctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggcttacactctcacagccatcttcatcaccaccac |
40280695 |
T |
|
| Q |
115 |
tccataagcctttaccatctgaatacacaccatcatcaccc |
155 |
Q |
| |
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| | ||||||||| |||||||||| ||||||||||||||| |
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| T |
40280694 |
ttcctaagcctttcccatctgaatggacaccatcatcaccc |
40280654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 40285483 - 40285424
Alignment:
| Q |
97 |
catcttcatcaccaccactccataagcctttaccatctgaatacacaccatcatcacccc |
156 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |
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| T |
40285483 |
catcttcatcaccaccactccctaagcatttaccatctgaatacacaccatcaacacccc |
40285424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 40280853 - 40280807
Alignment:
| Q |
145 |
catcatcaccccctaggcctccaccatttgaatatacaccattaaca |
191 |
Q |
| |
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||||||| || |||||||||||||||| |||||| |||||||||||| |
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|
| T |
40280853 |
catcatcgccacctaggcctccaccatctgaatacacaccattaaca |
40280807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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