View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4271_low_1 (Length: 567)
Name: NF4271_low_1
Description: NF4271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4271_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 554
Target Start/End: Complemental strand, 1033412 - 1032876
Alignment:
| Q |
19 |
atttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatttttcaaaatcattgcttgtcagtgacttgtctgtagaagatatcggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033412 |
atttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatttttcaaaatcattgcttgtcagtgacttgtctgtagaagatatcggt |
1033313 |
T |
|
| Q |
119 |
tcttgtccattcggctgaaaacctgttgagaataacatggacacacagagtaagtattttatttgtataaatgtgtgcatatatattacttaaaaaatca |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033312 |
tcttgtccattcggttgaaaacctgttgagaataacatggacacacagagtaagtattttatttgtataaatgtgtgcatatatattacttaaaaaatca |
1033213 |
T |
|
| Q |
219 |
gaaagcagttgcctcttaatagtagtaatactaaaagagnnnnnnnncagatttgggttgtgtataatcaaggagttgtgactgcatttattcagacacg |
318 |
Q |
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| T |
1033212 |
gaaagcagttgcctcttaatagtagtaatactaaaagaaaaaaaaaacagatttgggttgtgtataatcaaggagttgtgactgcatttattcagacacg |
1033113 |
T |
|
| Q |
319 |
tccgatcaatattggacagtctggatttcaagctcactaatttagatttaaaaaagtcaaaattttcattgaaatctagacagccgatcttgatgtggtt |
418 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033112 |
tccgatcaatattggacagtccggatttcaagctcactaatttagatttaaaaaagtcaaaattttcattgaaatctagacagccgatcttgatgtggtt |
1033013 |
T |
|
| Q |
419 |
gactgcatgcacgctgacacacaatctaaatccaacaataacaaacaacatcgaactaaaataatcttcaaa-ttatatgaggaaataaatacatacctg |
517 |
Q |
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| T |
1033012 |
gactgcatgcacgctgacacacaatctaaatccaacaataacaaacaacatcgaactaaaataatcttcaaatttatatgaggaaataaatacatactag |
1032913 |
T |
|
| Q |
518 |
aattagaaactcttccgacatgccaaatctgacagaa |
554 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
1032912 |
aattagaaactcttccaacatgccaaatctgacagaa |
1032876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 1043800 - 1043687
Alignment:
| Q |
23 |
acaatattaggaatttcatctgtccttagccttctcggtggtgagaatttttcaaaatcattgcttgtcagtgacttgtctgtagaagatatcggttctt |
122 |
Q |
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||||||| ||||||||||||||| ||||||| ||||||| | ||||| || | |||||||||||| ||||||||||| ||||||||||||||| ||| |
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| T |
1043800 |
acaatatgaggaatttcatctgtgcttagccgtctcggtttcgtgaattgttgtacatcattgcttgtgagtgacttgtccgtagaagatatcggtgctt |
1043701 |
T |
|
| Q |
123 |
gtccattcggctga |
136 |
Q |
| |
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||||||| |||||| |
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| T |
1043700 |
gtccatttggctga |
1043687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 1050008 - 1049941
Alignment:
| Q |
79 |
atcattgcttgtcagtgacttgtctgtagaagatatcggttcttgtccattcggctgaaaacctgttg |
146 |
Q |
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||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||| || |||||| |
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| T |
1050008 |
atcatcgcttgtgagtgacttgtttgtagaagatatcggtgcttgtccattcggctgataaactgttg |
1049941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 511 - 563
Target Start/End: Complemental strand, 1043327 - 1043275
Alignment:
| Q |
511 |
atacctgaattagaaactcttccgacatgccaaatctgacagaataatatacc |
563 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |
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| T |
1043327 |
atacctgaatttgaaactcttccaacatgccaaatctgacagaaaaatatacc |
1043275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 1071058 - 1070991
Alignment:
| Q |
92 |
agtgacttgtctgtagaagatatcggttcttgtccattcggctgaaaacctgttgagaataacatgga |
159 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||| ||||| |||||| || ||||||||||||||||||| |
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| T |
1071058 |
agtggcttgtctgtagaagatattggtgcttgcccatttggctgataaactgttgagaataacatgga |
1070991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 563
Target Start/End: Complemental strand, 1049439 - 1049369
Alignment:
| Q |
493 |
atatgaggaaataaatacatacctgaattagaaactcttccgacatgccaaatctgacagaataatatacc |
563 |
Q |
| |
|
|||||| |||||| ||||||||||||||| ||||| ||||| |||||||||| |||||||| |||||||| |
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| T |
1049439 |
atatgacgaaatagatacatacctgaatttgaaacccttccagcatgccaaatttgacagaaaaatatacc |
1049369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 1049641 - 1049579
Alignment:
| Q |
501 |
aaataaatacatacctgaattagaaactcttccgacatgccaaatctgacagaataatatacc |
563 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
1049641 |
aaataaataaatagctgaatttgaaactcttccaacatgccaaatttgacagaaaaatatacc |
1049579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 1052249 - 1052199
Alignment:
| Q |
504 |
taaatacatacctgaattagaaactcttccgacatgccaaatctgacagaa |
554 |
Q |
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|
||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
1052249 |
taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
1052199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 1065088 - 1065046
Alignment:
| Q |
509 |
acatacctgaattagaaactcttccgacatgccaaatctgaca |
551 |
Q |
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| T |
1065088 |
acatacctgaatcagaaactcttccaacatgccaaatctgaca |
1065046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 1641724 - 1641783
Alignment:
| Q |
504 |
taaatacatacctgaattagaaactcttccgacatgccaaatctgacagaataatatacc |
563 |
Q |
| |
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|||||| ||||||||||||||| | ||||| |||||||||||||||| || |||||||| |
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| T |
1641724 |
taaataaatacctgaattagaagcccttccaccatgccaaatctgacaaaagaatatacc |
1641783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 1065406 - 1065356
Alignment:
| Q |
23 |
acaatattaggaatttcatctgtccttagccttctcggtggtgagaatttt |
73 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||| || |||| ||||||| |
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| T |
1065406 |
acaatgttaggaatttcatctgtccttagccgtctaggcggtgtgaatttt |
1065356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 1053006 - 1052958
Alignment:
| Q |
23 |
acaatattaggaatttcatctgtccttagccttctcggtggtgagaatt |
71 |
Q |
| |
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||||||||||||||||| ||||| |||||||| |||||| ||| ||||| |
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| T |
1053006 |
acaatattaggaatttcttctgttcttagcctcctcggttgtgtgaatt |
1052958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 1065319 - 1065267
Alignment:
| Q |
92 |
agtgacttgtctgtagaagatatcggttcttgtccattcggctgaaaacctgt |
144 |
Q |
| |
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||||||||||||||||| ||||| ||| | |||||||| ||||||||| |||| |
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| T |
1065319 |
agtgacttgtctgtagatgatattggtgcctgtccatttggctgaaaaactgt |
1065267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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