View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4271_low_5 (Length: 203)
Name: NF4271_low_5
Description: NF4271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4271_low_5 |
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| [»] chr8 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 12587340 - 12587192
Alignment:
| Q |
55 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12587340 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
12587241 |
T |
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| Q |
155 |
ttatttgggattattcaataatcttaaactttactactattttattgct |
203 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
12587240 |
ttatttgagattattcaacaatcttaaactttactactattttattgct |
12587192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 27323308 - 27323204
Alignment:
| Q |
99 |
ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaataatcttaaactttactactatttta |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||| || ||||||| |
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| T |
27323308 |
ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgacaaatgattatttaggattattcaataatcttgaactttgctgttatttta |
27323209 |
T |
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| Q |
199 |
ttgct |
203 |
Q |
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||||| |
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| T |
27323208 |
ttgct |
27323204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 35036079 - 35036198
Alignment:
| Q |
85 |
ctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttga----taagtgattatttgggattattcaataatctta |
180 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| || ||||||||||||||| ||| | |
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| T |
35036079 |
ctattattactttgttgatattgaatttatgttgatagtgtaaactttattgttagggtttaataattaagtgtttttttgggattattcaacgatcatg |
35036178 |
T |
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| Q |
181 |
aactttactactattttatt |
200 |
Q |
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|||||| | ||||||||||| |
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| T |
35036179 |
aactttgccactattttatt |
35036198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 27324458 - 27324409
Alignment:
| Q |
54 |
atttgtttattattgtaatgagagttaacatctattattaccttgttgat |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27324458 |
atttgtttattattgtaatgagagttaacatctattatcaccttgttgat |
27324409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 21880338 - 21880190
Alignment:
| Q |
55 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21880338 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaaatttattgttagggtttgataagtga |
21880239 |
T |
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| Q |
155 |
ttatttgggattattcaataatcttaaactttactactattttattgct |
203 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21880238 |
ttatttgggattattcaacaatcttaaactttactactattttattgct |
21880190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 6901002 - 6901150
Alignment:
| Q |
55 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6901002 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
6901101 |
T |
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| Q |
155 |
ttatttgggattattcaataatcttaaactttactactattttattgct |
203 |
Q |
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|||||| ||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
6901102 |
ttatttaggattattcaacaatattaaactttactactattttattgct |
6901150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 49602890 - 49602742
Alignment:
| Q |
55 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
154 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49602890 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtacaaactttattgttagggtttgataagtga |
49602791 |
T |
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| Q |
155 |
ttatttgggattattcaataatcttaaactttactactattttattgct |
203 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
49602790 |
ttatttgggattattcaacaatcttaaactctactactattttattgct |
49602742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 22970287 - 22970435
Alignment:
| Q |
55 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
154 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
22970287 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtaaaaaatttattgttagggtttgataagtga |
22970386 |
T |
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| Q |
155 |
ttatttgggattattcaataatcttaaactttactactattttattgct |
203 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
22970387 |
ttatttgagattattcaacaatcttaaactttactactattttattgct |
22970435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 22329848 - 22329731
Alignment:
| Q |
52 |
ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
151 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22329848 |
ttatttgtttgttattgtaatgagagttaacatctattattaagttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
22329749 |
T |
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| Q |
152 |
tgattatttgggattatt |
169 |
Q |
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|||||||||||||||||| |
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| T |
22329748 |
tgattatttgggattatt |
22329731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 35360511 - 35360378
Alignment:
| Q |
52 |
ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
151 |
Q |
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||||||||| |||| |||| | ||||||| | ||||||||||||| |||||| || || ||||||| ||| ||||||||||||||||||| || || |
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| T |
35360511 |
ttatttgttaattacagtaacgtgagttaatttatattattaccttgccgatattaaacttttgttgatagtgataactttattgttagggtttaat-ag |
35360413 |
T |
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| Q |
152 |
tgattatttgggattattcaataatcttaaacttt |
186 |
Q |
| |
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|| |||||||| ||||||||| ||| ||||||||| |
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| T |
35360412 |
tgtttatttggaattattcaacaattttaaacttt |
35360378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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