View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272-Insertion-1 (Length: 278)
Name: NF4272-Insertion-1
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272-Insertion-1 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 47906118 - 47906377
Alignment:
| Q |
19 |
agtttcttgttcagacttaatagtagtattgtagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctccaccacc |
118 |
Q |
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| T |
47906118 |
agtttcttgttcagacttagtagtagtattgtagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctcctccacc |
47906217 |
T |
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| Q |
119 |
atcattgtgtcaacgtcatatcgaaggttctccctttcgctcaaggaggaggaggagttagagaggaaccggcggtaagtgtggactatgaagcaagtta |
218 |
Q |
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| T |
47906218 |
atcattgtgtcgacgtcatatcgaaggttctccctttcgctcaaggaggaggaggagttagagaggaaccggcggtaagtgtggactatgaagcaagtta |
47906317 |
T |
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| Q |
219 |
taaggagggaacaggttgttgtggcaaataccaacaaggtgacagataacagagcctcta |
278 |
Q |
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| T |
47906318 |
taaggagggaacaggttgttgtggcaaatgccaacaaggtgacagataacagagcctcta |
47906377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 47908890 - 47909058
Alignment:
| Q |
19 |
agtttcttgttcagacttaatagtagtattgtagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctccaccacc |
118 |
Q |
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| T |
47908890 |
agtttcttgttcagacttagtagtagtattgtagatgaaagacagaataagatttataacaaactcatgtaagccctgtggagcctcctcctcctccacc |
47908989 |
T |
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| Q |
119 |
atcattgtgtcaacgtcatatcgaaggttctccctttcgctcaaggaggaggaggagttagagaggaac |
187 |
Q |
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| T |
47908990 |
attattgtgtcgacgtcatatcgaaggttctccctttcgctcaaggaggaggaggagttagagaggaac |
47909058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 47899483 - 47899642
Alignment:
| Q |
50 |
tagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctccaccaccatcattgtgtcaacgtcatatcgaaggttct |
149 |
Q |
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| T |
47899483 |
tagatgaaggacggaatagcatatataacagactcatctaagccatgtggagcctcctcctcctccgttgttgttgactcgacgtcatattcaagggatt |
47899582 |
T |
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| Q |
150 |
ccctttcgctcaaggaggaggaggagttagagaggaaccggcggtaagtgtggactatga |
209 |
Q |
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| T |
47899583 |
ccaagtcgctcaacgaggaggaggagttagggtggaaccggcggcaagtgtggactatga |
47899642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 47911326 - 47911386
Alignment:
| Q |
48 |
tgtagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctc |
108 |
Q |
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| T |
47911326 |
tgtagatgaaagacggaatagcttttataacagactcgtctaagccctgtgcaacctcctc |
47911386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 39403265 - 39403346
Alignment:
| Q |
20 |
gtttcttgttcagacttaatagtagtattgtagatgaaagacggaataagatttataacaaactcatgtaagccctgtggag |
101 |
Q |
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| T |
39403265 |
gtttctttttcagactaagtagcagtattgtagatgaaagatggtatatgatttataacaaactcatgtaagccctgtggag |
39403346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 31209439 - 31209392
Alignment:
| Q |
162 |
aggaggaggaggagttagagaggaaccggcggtaagtgtggactatga |
209 |
Q |
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| T |
31209439 |
aggaggaggaggagttagggtggaaccggcggcaagtgtggactatga |
31209392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 31209554 - 31209493
Alignment:
| Q |
50 |
tagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctc |
111 |
Q |
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| T |
31209554 |
tagatgaaggacggaatagcatatataacagactcatctaagccatgtggagcctcctcctc |
31209493 |
T |
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