View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272-Insertion-2 (Length: 169)
Name: NF4272-Insertion-2
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 2e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 36724912 - 36725077
Alignment:
| Q |
3 |
aacatgaatatcatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacaacaa |
102 |
Q |
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| T |
36724912 |
aacatgaatgccatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacagcaa |
36725011 |
T |
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| Q |
103 |
cg--acacacgccaaacaagattttttattttaggtggaactttgagtttccaaactagattccaa |
166 |
Q |
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| T |
36725012 |
cgacacacacgccaaacaagattttttattttaggtggaactttgagtttccaaactagattccaa |
36725077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 716804 - 716721
Alignment:
| Q |
16 |
tcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacaa |
99 |
Q |
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| T |
716804 |
tcctcataattactttcacacattacacaatctattggacaatgaacctatctactaattaggtgtgctcatgttggaaaacaa |
716721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 12226117 - 12226075
Alignment:
| Q |
2 |
aaacatgaatatcatcctcataattacttccacatattacaca |
44 |
Q |
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| T |
12226117 |
aaacatgaatgtcatcctcataattatttccacaaattacaca |
12226075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 33907504 - 33907552
Alignment:
| Q |
110 |
cgccaaacaagattttttattttaggtggaactttgagtttccaaacta |
158 |
Q |
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| T |
33907504 |
cgccaaattagattttttattttaggtggcactttgagcttccacacta |
33907552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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