View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4272-Insertion-4 (Length: 79)
Name: NF4272-Insertion-4
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272-Insertion-4 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0075 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 75; Significance: 3e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19984505 - 19984427
Alignment:
| Q |
1 |
aatagttagtagattgtgcaaaattaacagagttagttacatacctttgtttaaccagagtacaactggttttgaagca |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19984505 |
aatagttagtagattgtgcaaaattaacagagttagttacataccttcgtttaaccagagtacaactggttttgaagca |
19984427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19985992 - 19985914
Alignment:
| Q |
1 |
aatagttagtagattgtgcaaaattaacagagttagttacatacctttgtttaaccagagtacaactggttttgaagca |
79 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
19985992 |
aatagttagtagattgtgcaaaattaacaaagttagttacatacctccatttaaccaaagtacaactggttttgaagca |
19985914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19985239 - 19985161
Alignment:
| Q |
1 |
aatagttagtagattgtgcaaaattaacagagttagttacatacctttgtttaaccagagtacaactggttttgaagca |
79 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
19985239 |
aatagttagtagattatgcaaaattaatagagttagttacatacctccatttaactagagtacaactagttttgaagca |
19985161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19983763 - 19983685
Alignment:
| Q |
1 |
aatagttagtagattgtgcaaaattaacagagttagttacatacctttgtttaaccagagtacaactggttttgaagca |
79 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
19983763 |
aatagttagcagattgtgcaaaattaacatagttggttacatacctccttttaaccaaagtacaactgattttgaagca |
19983685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 35; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 6559 - 6509
Alignment:
| Q |
29 |
agagttagttacatacctttgtttaaccagagtacaactggttttgaagca |
79 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6559 |
agagttagttacctaccaccgtttaaccagagtacaactggttttgaagca |
6509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 5551 - 5492
Alignment:
| Q |
20 |
aaaattaacagagttagttacatacctttgtttaaccagagtacaactggttttgaagca |
79 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
5551 |
aaaattaatagagttagttacctaccaccgtttaaatagagtacaactggttttgaagca |
5492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075; HSP #3
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 11155 - 11125
Alignment:
| Q |
49 |
gtttaaccagagtacaactggttttgaagca |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11155 |
gtttaaccagagtacaactggttttgaagca |
11125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University