View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_high_1 (Length: 809)
Name: NF4272_high_1
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 11 - 793
Target Start/End: Complemental strand, 44829036 - 44828255
Alignment:
| Q |
11 |
atcatcaggaaggtgaaacattagtatgcagtgatagtgatgaagagtcaaacgaggacaaggaagttgaacgtaaattttctcagggtgaagaccgatt |
110 |
Q |
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| T |
44829036 |
atcatcaggaaggtgaaacattagtatgcagtgatagtgatgaagagtcaaacgaggacaaggaagttgaacgtaaattttctcagggtgaagaccgatt |
44828937 |
T |
|
| Q |
111 |
tattaggtaaatcaaaatgtacatgttattatacttacatttagaagttctatttaatttatcagtagagttaaagatgtaaatttcttaaatttcaaat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
44828936 |
tattaggtaaatcaaaatgtacatgttattatacttacatttagaagttctatttaatttatcagtagaattaaagatgtaaatt-cttaaatttcaaat |
44828838 |
T |
|
| Q |
211 |
ttaattcatatgtaatacatgttttgctggacctccnnnnnnnttctacttattgtgcatcattttatctacttcattaaaataatttaagtttctcctt |
310 |
Q |
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| T |
44828837 |
ttaattgatatgtaatacatgttttgctggacctccaaaaaaattctacttattgtgcatcattttatctacttcattaaaataatttaagtttctcctt |
44828738 |
T |
|
| Q |
311 |
aactaaacatattatcttgtgactatttaatatattaggacggtatttgatgaacatggtttaactgaggaagtgttgagtattgttaaggatgtcatcg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828737 |
aactaaacatattatcttgtgactatttaatatattaggacggtatttgatgaacatggtttaactgaggaagtgttgagtattgttaaggatgtcatcg |
44828638 |
T |
|
| Q |
411 |
gaggtaccagttcagaaattcaggtaacgtagagtaatttacaagattaatatagctttgatgattgttaattctaatatgtattacaaatataagtttc |
510 |
Q |
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| T |
44828637 |
gaggtaccagttcagaaattcaggtaatgtagagtaatttacaagattaatatagctttgatgattgttaattctaatatgtattacaaaaataagtttc |
44828538 |
T |
|
| Q |
511 |
tttgtgatatgtgttgtattaattgcgtacgagcagctaattttatgtcatggacaaatgttctcaatcaaaatatgcaggagcgatataaaaatatcaa |
610 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828537 |
tttgtgatatgtgttgtattaattacgtatgagcagctaattttatgtcatggacaaatgttctcaatcaaaatatgcaggagcgatataaaaatatcaa |
44828438 |
T |
|
| Q |
611 |
ggaaaaggaccaaaatgatgaagatcgtagagaaagtgaatctcagactgatacatttttgaacaaaagcttgagtgtctctttagatacttttgacaac |
710 |
Q |
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| T |
44828437 |
ggaaaaggaccaaaatgatgaagatcgtagagaaagtgaatctcagactgatacatttttgaacaaaagcttgagtgtctctttagatacttttgacaac |
44828338 |
T |
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| Q |
711 |
ttttactgtcgtcgttgcatggtaaatacaagnnnnnnntatcaatattttgccnnnnnnnncaccacaatattgttgtctat |
793 |
Q |
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| T |
44828337 |
ttttactgtcgtcgttgcatggtaaatacaagaaaaaaatatcaatattttgccttttttttcaccacaatattgttgtctat |
44828255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 564 - 687
Target Start/End: Complemental strand, 8370763 - 8370640
Alignment:
| Q |
564 |
acaaatgttctcaatcaaaatatgcaggagcgatataaaaatatcaaggaaaaggaccaaaatgatgaagatcgtagagaaagtgaatctcagactgata |
663 |
Q |
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|||||| || ||||||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||| | |||||| || | |||| ||||| | |
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| T |
8370763 |
acaaatattttcaatcaaaatatgcaggagcattatcaaaatatcaaggaaaaggaccaacattctgaagattttggagaaaatggacctcaaactgaga |
8370664 |
T |
|
| Q |
664 |
catttttgaacaaaagcttgagtg |
687 |
Q |
| |
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|| ||||||||||||||| |||| |
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| T |
8370663 |
tatatttgaacaaaagcttaagtg |
8370640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 564 - 687
Target Start/End: Complemental strand, 8372165 - 8372042
Alignment:
| Q |
564 |
acaaatgttctcaatcaaaatatgcaggagcgatataaaaatatcaaggaaaaggaccaaaatgatgaagatcgtagagaaagtgaatctcagactgata |
663 |
Q |
| |
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|||||| || |||||||||||||||||||||| ||| |||||| | |||||| || ||| || ||||||| | |||||| || |||||| ||||| | |
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| T |
8372165 |
acaaatattttcaatcaaaatatgcaggagcgttatcgaaatattagggaaaaagatcaacattctgaagattttggagaaaatggatctcaaactgaga |
8372066 |
T |
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| Q |
664 |
catttttgaacaaaagcttgagtg |
687 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
8372065 |
tatgtttgaacaaaagcttgagtg |
8372042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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