View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_high_12 (Length: 337)
Name: NF4272_high_12
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 962862 - 962790
Alignment:
| Q |
227 |
acaacaccaacatagaagggagagagatttatattaccaacttggagtggaggatgtgatctgagttagaaga |
299 |
Q |
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| T |
962862 |
acaacaccaacataggagggagatagatttatattaccaacatggtgtggaggttgcgatctgagttagaaga |
962790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 944388 - 944320
Alignment:
| Q |
229 |
aacaccaacatagaagggagagagatttatattaccaacttggagtggaggatgtgatctgagttagaaga |
299 |
Q |
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| T |
944388 |
aacaccaacataggagggagaga--tttatataaccaacttggagtggaggatacgatctgagttagaaga |
944320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 963028 - 962876
Alignment:
| Q |
27 |
aatttcacaactcacccaaaatttccaacatttcagaatacaaacacataaccaaacaatttttcaagtgtcaccctcaactttcatctgtaatctccca |
126 |
Q |
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| T |
963028 |
aatttcacaactcactcaaaatttccaaaatttcacaactcataaacagaaccaaacaatttctcaattgttatcgtcaactttcattaataatttgtca |
962929 |
T |
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| Q |
127 |
tgtctatcatggaaagctctaattgtttctctatcaaatctcaattttcaagtct |
181 |
Q |
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| T |
962928 |
tttctatcatgaaaaccccaaat--tttctctctcaaatctcaattttcaagtct |
962876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 944513 - 944399
Alignment:
| Q |
70 |
acacataaccaaacaatttttcaagtgtcaccctcaactttcatctgtaatctcccatgtctatcatggaaagctctaattgtttctctatcaaatctca |
169 |
Q |
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| T |
944513 |
acacataaccaaacaattcctcaattgtcaccgtcaactttcatatataatttgtcatgtctatcatggaagccccaaat--tttctctctcaaatccca |
944416 |
T |
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| Q |
170 |
attttcaagtctcatgc |
186 |
Q |
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| T |
944415 |
aatttcaagtcttatgc |
944399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 963069 - 963022
Alignment:
| Q |
14 |
gagatctacccacaatttcacaactcacccaaaatttccaacatttca |
61 |
Q |
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| T |
963069 |
gagatctgcccacaatttcacaactctctcaaaatttccaaaatttca |
963022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 14290104 - 14290186
Alignment:
| Q |
88 |
tttcaagtgtcaccctcaactttcatctgtaatctcccatgtctatcatggaaagctctaattgtttctctatcaaatctcaa |
170 |
Q |
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| T |
14290104 |
tttcaattgtcaccctcaactttcatctataatctctaatgtctaacatggaaagttccaattttttctctctcaaatctcaa |
14290186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 27106699 - 27106528
Alignment:
| Q |
14 |
gagatctacccacaatttcacaactcacccaaaatttccaacatttcagaatacaa-acacataaccaaacaatttttcaagtgtcaccctcaactttca |
112 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||| |||||| || | |||| | || ||||||| |||||||||||| |||||||||| |
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| T |
27106699 |
gagatctacccacaatttcacaactcacctaaaattttcaaaatttcacaacatgtgacactgatacatacaatttctcaagtgtcaccgtcaactttca |
27106600 |
T |
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| Q |
113 |
tctgtaatctcccatgtctatcatggaaagctctaattgtttctctatcaaatctcaattttcaagtctcatgc |
186 |
Q |
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| T |
27106599 |
tctataaattttcatgtttatcatggaaa-ccccaatt-tttctctctcagatctcaattttcaagtcttatgc |
27106528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 27106519 - 27106447
Alignment:
| Q |
227 |
acaacaccaacatagaagggagagagatttatattaccaacttggagtggaggatgtgatctgagttagaaga |
299 |
Q |
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||||||| || |||| |||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||| |
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| T |
27106519 |
acaacacgaatataggagggagagagatttatattaccaacttggactggaggatgcgatatgaattagaaga |
27106447 |
T |
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