View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4272_high_2 (Length: 709)
Name: NF4272_high_2
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Original strand, 38862344 - 38862827
Alignment:
| Q |
7 |
acatcatcaccacctccaccgccgcctattatgtaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgcggcggagataa |
106 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38862344 |
acatcatcaccacctccaccgccgccgattaaggaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgccgcggagataa |
38862443 |
T |
|
| Q |
107 |
gagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagagg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38862444 |
gagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagagg |
38862543 |
T |
|
| Q |
207 |
ttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggtacttcacctgta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
38862544 |
ttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggcacttcacctgta |
38862643 |
T |
|
| Q |
307 |
ttggcactcaaaagaaaacatagcatgagaaaaaagtccaataaggtaagtacaaagagaatcaaaagtgaatatcatagtgatcaaattcagattgaga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38862644 |
ttggcactcaaaagaaaacatagcatgagaaaaaagtccaataaggtaagtacaaagagaatcaaaagtgaatatcatagtgatcaaattcagattgaga |
38862743 |
T |
|
| Q |
407 |
ccaatattaattctcaaaatgtgtttgtttttgaggatttgggtgctgaatatctggaccaactattgagcttaacttattagc |
490 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38862744 |
ccaatattaattctcaaaatttgtttgtttttgaggatttgggtgctgaatatctggaccaactattgagcttaacttattagc |
38862827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 537 - 694
Target Start/End: Original strand, 38862874 - 38863031
Alignment:
| Q |
537 |
catcaactttgaattcttaattcatgattacaggataaatgttctataagaatattcctcatcttccttcatcgtcatcatcattacctcattcttgaan |
636 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38862874 |
catcaattttgaattcttaattcatgattacaggataaatgttctataagaatattcctcatcttccttcatcgtcatcatcattacctcattcttgaat |
38862973 |
T |
|
| Q |
637 |
nnnnnnattttgcactgttgttctgtaaaggaaagaaaaactttacaaagtatgaaat |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38862974 |
ttttttattttgcactgttgttctgtaaaggaaagaaaaactttacaaagtatgaaat |
38863031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 38830698 - 38830810
Alignment:
| Q |
82 |
tggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatg |
181 |
Q |
| |
|
||||||||||| || || |||||||| || |||||||||| |||||| | ||||||||||||||||| || || || |||||||||||||||||||||| |
|
|
| T |
38830698 |
tggggaaaattcgcagcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatg |
38830797 |
T |
|
| Q |
182 |
atcaagcagcttt |
194 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
38830798 |
accaagcagcttt |
38830810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 41 - 464
Target Start/End: Original strand, 19840512 - 19840935
Alignment:
| Q |
41 |
aaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggat |
140 |
Q |
| |
|
||||||| ||||| | |||||||| ||||||| ||||||||||| ||||| |||||||||||||| || |||||||||||||| | |||||| ||| | |
|
|
| T |
19840512 |
aaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaattcgcggcggagataagggactcaacaagaaaaggggctagagtatggct |
19840611 |
T |
|
| Q |
141 |
tggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctgaagaagta |
240 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| || ||||| |||| || | |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
19840612 |
tggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcttatttagcaagaggttcattggctgtgttgaattttccagaagaagta |
19840711 |
T |
|
| Q |
241 |
gtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggtacttcacctgtattggcactcaaaagaaaacatagcatgagaaaaa |
340 |
Q |
| |
|
|| | ||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||| ||||| |||||| | || |||||||| ||||| ||| |
|
|
| T |
19840712 |
gttaaagaatcactcaaagaaatgtctagaaattctaagcctttggaagaaggtacttcgcctgtgttggcaataaagagaaaacacgtaatgaggaaat |
19840811 |
T |
|
| Q |
341 |
agtccaataaggtaagtacaaagagaatcaaaagtgaatatcatagtgatcaaattcagattgagaccaatattaattctcaaaatgtgtttgtttttga |
440 |
Q |
| |
|
|||||||||| |||| ||| | ||| |||| ||| |||||||||||| |||||||| || ||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
19840812 |
cacccaataaggttagtaaaaaaaaaattaaaactgatcatcatagtgatcgaattcagagagaaaccaatactaaatctcaaaatgtgtttgtgtttga |
19840911 |
T |
|
| Q |
441 |
ggatttgggtgctgaatatctgga |
464 |
Q |
| |
|
|||||||||| | ||||||||||| |
|
|
| T |
19840912 |
ggatttgggttcagaatatctgga |
19840935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 57 - 489
Target Start/End: Complemental strand, 19720065 - 19719627
Alignment:
| Q |
57 |
atttagaggagtaagaactaggccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacg |
156 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||| |||||||||||||| || |||||||||||||| | |||||| ||| ||||||||||| ||||| |
|
|
| T |
19720065 |
atttagaggagtacgaagaaggccatgggggaaattcgcggcggagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacg |
19719966 |
T |
|
| Q |
157 |
gccgaagcagctgctttagcttatgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctgaagaagtagtgagagaatcactta |
256 |
Q |
| |
|
||||||| ||||||||||||||| || ||||| ||||||| | ||||||||||||||||||||||||||||||| || || ||||| | ||||| ||| | |
|
|
| T |
19719965 |
gccgaagaagctgctttagcttacgaccaagctgcttttttagcaagaggttcattggcagtgttgaattttccagaggatgtagttaaagaattactca |
19719866 |
T |
|
| Q |
257 |
aagaaatggctagtaattctaagcctttggatgaaggta------cttcacctgtattggcactcaaaagaaaacatagcatgagaaaaaagtccaataa |
350 |
Q |
| |
|
||||||||||||| |||||| ||||||| || ||||||| |||| ||||| |||||| | || |||||| | | || ||||||| ||||||| |
|
|
| T |
19719865 |
aagaaatggctagaaattctgagcctttagaagaaggtacttctacttcccctgtgttggcaataaagagaaaatacatcaagagaaaatcacccaataa |
19719766 |
T |
|
| Q |
351 |
ggtaagtacaaagagaatcaaaagtgaatatcatagtgatcaaattcagattgagaccaatattaattctcaaaatgtgtttgtttttgaggatttgggt |
450 |
Q |
| |
|
||| || | ||||| ||| |||| ||| || || |||||| || ||| |||||||||| ||| ||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
19719765 |
ggttagcaaaaagaaaatgaaaactgatcataatggtgatcgaacaaagagagagaccaatactaaatctaaaaatgtgtttgtgtttgaagatttgggt |
19719666 |
T |
|
| Q |
451 |
gctgaatatctggaccaactattgagcttaacttattag |
489 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
19719665 |
gctgaatatcttgagcaactattgagcttaacttcttag |
19719627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 59 - 489
Target Start/End: Complemental strand, 19892954 - 19892512
Alignment:
| Q |
59 |
ttagaggagtaagaactaggccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggc |
158 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||| ||||| |||||||| || || ||||||||||| | ||| || ||| ||||||||||| |||||| |
|
|
| T |
19892954 |
ttagaggagtacgaagaaggccatgggggaaattcgcggccgagataagggactcgacaagaaaaggggctagggtatggcttggaacattcaacacgga |
19892855 |
T |
|
| Q |
159 |
cgaagcagctgctttagcttatgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaa |
258 |
Q |
| |
|
|||| ||| |||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||| || || ||||| | ||| ||||| ||| |
|
|
| T |
19892854 |
ggaagaagccgctttagcttatgaccaagccgctttttcagcaaaaggttcattggcagtgttgaattttccggaggatgtagttaaagattcactcaaa |
19892755 |
T |
|
| Q |
259 |
gaaatggctagtaattctaagcctttggatgaaggtacttcacctgtattggcactcaaaagaaaa---catag------cat---gagaaaaaagtcca |
346 |
Q |
| |
|
|||||||||| |||||| ||||||| || ||||||||||| ||||| |||||| |||| |||||| | || ||| ||||||| |||| |
|
|
| T |
19892754 |
gaaatggctataaattctgagcctttagaagaaggtacttctcctgtgttggcaatcaagagaaaaatcaagagagaacacattgcgagaaaatcatcca |
19892655 |
T |
|
| Q |
347 |
ataaggtaagtacaaagagaatcaaaagtgaatatcatagtgatcaaattcagattgagaccaatattaattctcaaaatgtgtttgtttttgaggattt |
446 |
Q |
| |
|
|| |||| |||| ||||| ||| |||| ||| || || |||||| || ||| |||||||||| ||| ||| || |||||||||| ||||| ||||| |
|
|
| T |
19892654 |
atgaggttagtaaaaagaaaataaaaattgatcataatggtgatcgaacaaagagagagaccaatactaaatctaaacatgtgtttgtctttgaagattt |
19892555 |
T |
|
| Q |
447 |
gggtgctgaatatctggaccaactattgagcttaacttattag |
489 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
19892554 |
gggtgctgaatatcttgagcaactattgagcttaacttcttag |
19892512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 7e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 30624003 - 30623817
Alignment:
| Q |
79 |
ccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagctt |
178 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| || || || ||||| ||||||||||||| |
|
|
| T |
30624003 |
ccatggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgttagagtttggattggtacatttgatacagctgaagctgctgctttagctt |
30623904 |
T |
|
| Q |
179 |
atgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaagaaatgg |
265 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| | || ||||| |||||| | ||||| |||| |
|
|
| T |
30623903 |
atgatcaagcagctttatcaacaagaggatcaatggcagtgttgaattttcctgaacatgttgtgagggaatcattgaaagatatgg |
30623817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 30629634 - 30629448
Alignment:
| Q |
79 |
ccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagctt |
178 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||| ||||| ||||||||||| |||||||| ||||| || || || |||||||| |||||||||| |
|
|
| T |
30629634 |
ccatggggaaaattcgcagcggaaataagagactcaactagaaatggtgttagagtttggattggtacatttgatacagctgaagcagcagctttagctt |
30629535 |
T |
|
| Q |
179 |
atgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaagaaatgg |
265 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| | || ||||| |||||| | ||||| |||| |
|
|
| T |
30629534 |
atgatcaagcagctttatcaacaagaggatcaatggcagtgttgaattttcctgaacatgttgtgagggaatcattgaaagatatgg |
30629448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 33042550 - 33042668
Alignment:
| Q |
79 |
ccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagctt |
178 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| || || || || | || |||||| | ||||| || || | || ||||| |||||||| |||| |
|
|
| T |
33042550 |
ccatgggggaaatttgcagcagagataagagattcgacgaggaatggaatgagggtgtggctaggaacctttgatagtgcagaagctgctgctttggctt |
33042649 |
T |
|
| Q |
179 |
atgatcaagcagctttttc |
197 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33042650 |
atgatcaagcagctttttc |
33042668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 4420277 - 4420143
Alignment:
| Q |
60 |
tagaggagtaagaactaggccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggcc |
159 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||| || || || ||||||||| ||| |||||| ||||| ||| |||| ||||| || || || |
|
|
| T |
4420277 |
tagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcatcaaagaaaggttcaagagtttggcttggtacatttgatacagct |
4420178 |
T |
|
| Q |
160 |
gaagcagctgctttagcttatgatcaagcagcttt |
194 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
4420177 |
gaacaagctgctttagcttatgataaagctgcttt |
4420143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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