View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_high_20 (Length: 284)
Name: NF4272_high_20
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 40879961 - 40879695
Alignment:
| Q |
1 |
cagaagttgtgaggtatatatattggtggagtatacttacaaggattagtgggaaatgtgagggacataacataagagtatacttacaagagagaaatga |
100 |
Q |
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| T |
40879961 |
cagaagttgtgaggtgtatatattggtggagtatacttacaaggattagtgggaaatgtgagggacataacataagagtatacttacaagagagaaatga |
40879862 |
T |
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| Q |
101 |
aggagttgtgatgcatgaagagataggtgaagcagaagttgttgctttaatttcaataaatcttctatgttggaacaagtttattgtttttagaataaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879861 |
aggagttgtgatgcatgaagagataggtgaagcaaaagttgtcgc-----tttcaataaatcttctatgttggaacaagtttattgtttttagaataaga |
40879767 |
T |
|
| Q |
201 |
agaagcattaaagagaaaggagagaattcacttttggattgaaaggatcaagtttattcattccaatatatt |
272 |
Q |
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| T |
40879766 |
agaagtattaaagagaaaggagagaattcacttttggattgaaaggatcaagtttattcattccaatatatt |
40879695 |
T |
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