View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4272_high_27 (Length: 252)

Name: NF4272_high_27
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4272_high_27
NF4272_high_27
[»] chr2 (3 HSPs)
chr2 (16-252)||(3113026-3113262)
chr2 (190-233)||(14316964-14317007)
chr2 (190-227)||(42974234-42974271)
[»] chr8 (5 HSPs)
chr8 (16-114)||(22700314-22700412)
chr8 (190-228)||(8194088-8194126)
chr8 (190-227)||(6950218-6950255)
chr8 (195-228)||(7008516-7008549)
chr8 (201-233)||(2093178-2093210)
[»] chr3 (3 HSPs)
chr3 (195-233)||(24625387-24625425)
chr3 (190-233)||(5430923-5430966)
chr3 (194-227)||(22723948-22723981)
[»] chr4 (2 HSPs)
chr4 (16-84)||(35892945-35893013)
chr4 (195-227)||(18512570-18512602)
[»] chr6 (5 HSPs)
chr6 (179-229)||(21919945-21919995)
chr6 (190-251)||(32975860-32975921)
chr6 (190-233)||(4006611-4006654)
chr6 (195-228)||(9041567-9041600)
chr6 (199-227)||(8349815-8349843)
[»] chr5 (4 HSPs)
chr5 (195-251)||(6773424-6773480)
chr5 (190-233)||(26516180-26516223)
chr5 (190-228)||(13782016-13782054)
chr5 (190-227)||(39257537-39257574)
[»] chr7 (2 HSPs)
chr7 (190-231)||(28702639-28702680)
chr7 (195-236)||(34922843-34922884)
[»] chr1 (1 HSPs)
chr1 (183-227)||(49365939-49365983)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 3113262 - 3113026
Alignment:
Q  16 cagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatacctctgcatctccacgacctattgctgcatattttaccatgctgta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3113262 cagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatacctctgcatctccacgacctattgctgcatattttaccatgctgta 3113163  T
Q  116 tactcttaatggttgtttcctgcacaaaccagaaaaaacaactatattataaacctataatatacttaggctccgtttagataagcaacttaattaagcg 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3113162 tactcttaatggttgtttcctgcacacaccagaaaaaacaactatattataaacctataatatacttgggctccgtttagataagcaacttaattaagcg 3113063  T
Q  216 cttatagcataagtgcttgtcgtttaagagtttatgc 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  3113062 cttatagcataagtgcttgtcgtttaagagtttatgc 3113026  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 14317007 - 14316964
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataagtgctt 233  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||    
T  14317007 gtttggataaacaaattaattaagcgcttatagcataagtgctt 14316964  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 42974234 - 42974271
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataa 227  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  42974234 gtttggataagcaacttaattaagagcttatagcataa 42974271  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 22700314 - 22700412
Alignment:
Q  16 cagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatacctctgcatctccacgacctattgctgcatattttaccatgctgt 114  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||| ||| |||||||| |   ||||||||||||| |||||||| ||||    
T  22700314 cagcatgatcccatatcttctctttgtaacctgactttgcaaatttcatgaatatctcggcatctccccttgctattgctgcatactttaccatactgt 22700412  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 8194126 - 8194088
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataag 228  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  8194126 gtttagataaacaacttaattaagcccttatagcataag 8194088  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 6950218 - 6950255
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataa 227  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  6950218 gtttagataaacaacttaattaagtgcttatagcataa 6950255  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 7008516 - 7008549
Alignment:
Q  195 gataagcaacttaattaagcgcttatagcataag 228  Q
    ||||| ||||||||||||||||||||||||||||    
T  7008516 gataaacaacttaattaagcgcttatagcataag 7008549  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 2093178 - 2093210
Alignment:
Q  201 caacttaattaagcgcttatagcataagtgctt 233  Q
    |||||||||||||||||||| ||||||||||||    
T  2093178 caacttaattaagcgcttatcgcataagtgctt 2093210  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 24625425 - 24625387
Alignment:
Q  195 gataagcaacttaattaagcgcttatagcataagtgctt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24625425 gataagcaacttaattaagcgcttatagcataagtgctt 24625387  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 5430923 - 5430966
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataagtgctt 233  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||    
T  5430923 gtttggataagcaacttaattaagagcttatatcataagtgctt 5430966  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 22723948 - 22723981
Alignment:
Q  194 agataagcaacttaattaagcgcttatagcataa 227  Q
    |||||| |||||||||||||||||||||||||||    
T  22723948 agataaacaacttaattaagcgcttatagcataa 22723981  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 35892945 - 35893013
Alignment:
Q  16 cagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatacctctgcatctccac 84  Q
    |||||||||||||||||||||| |||||||| | ||||||||| ||||| || ||||| ||||| ||||    
T  35892945 cagcatgatcccatattttctctttgtaaccagtccttgcaaacttcataaacacctcagcatccccac 35893013  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 18512602 - 18512570
Alignment:
Q  195 gataagcaacttaattaagcgcttatagcataa 227  Q
    ||||||||||||||||||| |||||||||||||    
T  18512602 gataagcaacttaattaagtgcttatagcataa 18512570  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 21919945 - 21919995
Alignment:
Q  179 acttaggctccgtttagataagcaacttaattaagcgcttatagcataagt 229  Q
    |||||||| | |||| |||||| ||||||||||||||||||||||||||||    
T  21919945 acttaggccctgtttggataagaaacttaattaagcgcttatagcataagt 21919995  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 32975860 - 32975921
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatg 251  Q
    |||||||||| ||||||||||||||| |||||||||||| |||| || | |||| |||||||    
T  32975860 gtttagataaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatg 32975921  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 4006611 - 4006654
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataagtgctt 233  Q
    |||| |||||||||||||||||| | ||||||||||||||||||    
T  4006611 gtttggataagcaacttaattaatcccttatagcataagtgctt 4006654  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 9041600 - 9041567
Alignment:
Q  195 gataagcaacttaattaagcgcttatagcataag 228  Q
    ||||| ||||||||||||||||||||||||||||    
T  9041600 gataaacaacttaattaagcgcttatagcataag 9041567  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 8349843 - 8349815
Alignment:
Q  199 agcaacttaattaagcgcttatagcataa 227  Q
    |||||||||||||||||||||||||||||    
T  8349843 agcaacttaattaagcgcttatagcataa 8349815  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 6773480 - 6773424
Alignment:
Q  195 gataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatg 251  Q
    ||||| |||||||||||||||||| ||||||||| | |||||||  |||||||||||    
T  6773480 gataaacaacttaattaagcgcttctagcataagagattgtcgtacaagagtttatg 6773424  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 26516180 - 26516223
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataagtgctt 233  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgctt 26516223  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 13782054 - 13782016
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataag 228  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  13782054 gtttagataaacaacttaattaagcgcttatggcataag 13782016  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 39257574 - 39257537
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataa 227  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  39257574 gtttggataaacaacttaattaagcgcttatagcataa 39257537  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 28702639 - 28702680
Alignment:
Q  190 gtttagataagcaacttaattaagcgcttatagcataagtgc 231  Q
    |||| ||||| |||||||||||||| ||||||||||||||||    
T  28702639 gtttggataaacaacttaattaagcacttatagcataagtgc 28702680  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 34922843 - 34922884
Alignment:
Q  195 gataagcaacttaattaagcgcttatagcataagtgcttgtc 236  Q
    ||||| |||||||||||| | |||||||||||||||||||||    
T  34922843 gataaacaacttaattaacctcttatagcataagtgcttgtc 34922884  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 49365983 - 49365939
Alignment:
Q  183 aggctccgtttagataagcaacttaattaagcgcttatagcataa 227  Q
    |||||| |||| ||||| ||||||| |||||||||||||||||||    
T  49365983 aggctctgtttggataaacaacttagttaagcgcttatagcataa 49365939  T

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