View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_high_28 (Length: 250)
Name: NF4272_high_28
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 38241442 - 38241673
Alignment:
| Q |
21 |
tgcgaggaaaatctaacagttataagctggctaagnnnnnnn-caaattacgaaaacaaagcatcccaacgattactacattcattgtagcatgcaatca |
119 |
Q |
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| T |
38241442 |
tgcgaggaaaatctaacagatttaagctgactaagcaaaaaaacaaattacgaaaacaaagcatcccaacgattactacgttcattgtagcacgcaatca |
38241541 |
T |
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| Q |
120 |
ctt-aacaaattgtgccattctccaatcacacatacaagactcaacctacataattatgcagatcactctaatgagagaccctgcacaaatcctttccca |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38241542 |
ctttaacaaattgtgccattctccaatcacacatacaagactcaacctacataattatgcagatcactctaatgagagaccctgcacaaatcctttccca |
38241641 |
T |
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| Q |
219 |
aaaacttgcagccacacttaaataattaaacc |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38241642 |
aaaacttgcagccacacttaaataattaaacc |
38241673 |
T |
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