View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4272_high_33 (Length: 238)
Name: NF4272_high_33
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 8847535 - 8847332
Alignment:
| Q |
18 |
ctttgatttgatggcagcagcaaatccaggtttgtaagtgattatccttcttcgctttacaaacaacaagaatttatgatcagattctcaactaaactca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8847535 |
ctttgatttgatggcagcagcaaatccaggtttgtaagtgattatccttcttcgctttacaaacaacaagaatttatgatcagattctcaactaaactca |
8847436 |
T |
|
| Q |
118 |
acgaacaattcttgttattcttcacttttcatttttgaaatactataaaataaacaaaattttgaaactcatgttccacgagtacatgaaatatatcaat |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8847435 |
acgaacaattcttgttattc-tcacttttcatttttgaaatactataaaataaacaaaattttgaaactcatgttccacgagtatatgaaatatatcaat |
8847337 |
T |
|
| Q |
218 |
caagc |
222 |
Q |
| |
|
||||| |
|
|
| T |
8847336 |
caagc |
8847332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University