View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_high_4 (Length: 523)
Name: NF4272_high_4
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Original strand, 21100184 - 21100682
Alignment:
| Q |
11 |
cataggggaagaaacaaaagacagttttctaccaaccatgtaatccatgtttgaacttgtgatttgttgtttttgctgtcatggtataaattacaagtta |
110 |
Q |
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| T |
21100184 |
cataggggaaggcacaaaagacagttttctaccaaccatgcaatccatgtttgaacttgtgatttgttgtttttgctgtcatggtataaattataagtta |
21100283 |
T |
|
| Q |
111 |
ataacaacacaggaattactgtaaaaaataaataattttgttgtgaatgttatatcttagatggataacttccacgactgttagacccaatgatattatt |
210 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21100284 |
ataacaacacagtaattattgtaaaaaataaataattttgttgtgaatgttataccttagatggataacttccacgactgttagacctaatgatattatt |
21100383 |
T |
|
| Q |
211 |
cccaacaatagaagatttcccattcgatttcttcttagtagaaccaaaatcatggtaaagtacaacattttcagtttgtttacgtgttttcctgggtaag |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
21100384 |
cccaacaatagaagatttcccattggatttcttcttagtagaaccagaaccatggtaaggtacaacattttcagtttgtttacgtgttttcttgggtaag |
21100483 |
T |
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| Q |
311 |
tttggttcatcatcttcatcagaagagatcataagtacaatgtttgatatgtcatcttttgtagcatgtgcactaccactgaagtgaactggtgtggtgt |
410 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |
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| T |
21100484 |
tttggttcatcaccttcattagaagagatcataagtacaatgtctgatatgtcatcttttgcagcatgcgcactaccactgaagtgaattggtgtggtgt |
21100583 |
T |
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| Q |
411 |
tagtgttaggagacagtccagttttgatggtattaggtgtagggttaagcagcatattctctatgtttttgagtttgttcattagtgtattgcaaatac |
509 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21100584 |
tagtgttaggagacagtccagttttgatggtattagatgtagggttaagcaacatattctctatgtttttgagtttgttcattagtgtattgcaaatac |
21100682 |
T |
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