View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_high_7 (Length: 434)
Name: NF4272_high_7
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 369
Target Start/End: Original strand, 2528974 - 2529331
Alignment:
| Q |
12 |
acatcatcataacaaaagggtgagtgagatcaaacataccaacccaacacaaaacctgcatttgtttcaccaatgtagtttctcaaagttcaatttttta |
111 |
Q |
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| T |
2528974 |
acatcatcataacaaaagggtgagtgagatcaaacataccaacccaacacaaaacctgcatttgtttcaccaatgtagtttctcaaagttcaatttttta |
2529073 |
T |
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| Q |
112 |
taaccatatgtaatacccaaaagagcaaaagagtgtgttttaagacaaaatatttattggnnnnnnnttatcaagaaaataaatagaatgatgaaaattg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2529074 |
taaccatatgtaatacccaaaagagcaaaagagtgtgttttaagacaaaatatttattggaaaaaaattatcaagaaaataaatagaatgatgaaaattg |
2529173 |
T |
|
| Q |
212 |
aaaagtaccttatgagtgtgagacaccgatctgagaaagtgaatgaatgaacaaagcaatgtgattaaggaacaagatcaacagtgtgagaaaaactaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2529174 |
aaaagtaccttatgagtgtgagacaccgatctgagaaagtgaatgaatgaacaaagcaatgtgagtaaggaacaagatcaacagtgtgagaaaaactaag |
2529273 |
T |
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| Q |
312 |
ttgataaacaaacaaccttcacaactgtgtctgttgtttgtgcatgtaaaatgtatgc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529274 |
ttgataaacaaacaaccttcacaactgtgtctgttgtttgtgcatgtaaaatgtatgc |
2529331 |
T |
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