View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_high_9 (Length: 352)
Name: NF4272_high_9
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 91 - 333
Target Start/End: Complemental strand, 4444982 - 4444745
Alignment:
| Q |
91 |
gtgagtttcttagagggatgatgttgacaaacaaggaattagcaatgatcattaacgacaataaacagaagaggcctctgtgtgtccggtgactctaact |
190 |
Q |
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| T |
4444982 |
gtgagtttcttagagggatgatgttgacaaacaaggaa---gcaatgatcattaacgacaataaacagaagaggcctc-gtgtgtccggtgactctaact |
4444887 |
T |
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| Q |
191 |
gtgtaacttcgcaacctctaacaaattactcttttgtcaacaaagcagccgcaaacgtggctttttgaaatgaatgaaaaaacattcaagaatccctttt |
290 |
Q |
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| T |
4444886 |
gtgtaactttgcaacctctaacaaattactcttttgtcaacaacgcagccgcaaacgtggc-ttttgaaatgactgaaaaaacattcaagaatcccttct |
4444788 |
T |
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| Q |
291 |
tcccggttgatttcgatacttactgatcgttagcagtcgggta |
333 |
Q |
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| T |
4444787 |
tcccagttgatttcgatacttactgatcgttagcagtcgggta |
4444745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 4445064 - 4445016
Alignment:
| Q |
15 |
atgaacaagacagaaaaatcaaacaatggaaggaaacaagactatggtt |
63 |
Q |
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| T |
4445064 |
atgaacaacacagaaaaatcaaacaatggaaggaaacaagactatggtt |
4445016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 322
Target Start/End: Original strand, 37558480 - 37558610
Alignment:
| Q |
191 |
gtgtaacttcgcaacctctaacaaattactcttttgtcaacaaagcagccgcaaacgtggctttttgaaatgaatgaaaaaacattcaagaatccctttt |
290 |
Q |
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| T |
37558480 |
gtgtaacttcgcaacctctaccaaattattcttttgtcaacaatgcagctgtggagttggc-tttcaaaatgactgaaaaatcactcaaggatcccttct |
37558578 |
T |
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| Q |
291 |
tcccggttgatttcgatacttactgatcgtta |
322 |
Q |
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| T |
37558579 |
tcccagttgatttggatacttattgttcgtta |
37558610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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