View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4272_low_10 (Length: 370)
Name: NF4272_low_10
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_10 |
 | |
|
| [»] scaffold0064 (2 HSPs) |
| | |
|
| [»] scaffold0128 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 355
Target Start/End: Complemental strand, 7328533 - 7328183
Alignment:
| Q |
5 |
aaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328533 |
aaggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttactttcagcaggttgaaaccagactttcgacataatccttgatagag |
7328434 |
T |
|
| Q |
105 |
taccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7328433 |
taccaacatatctttttgttaactctagattccagtactctattagttctcaagttatagagaattgcttggttatgcaggcagcttgcgaatacgattg |
7328334 |
T |
|
| Q |
205 |
tatcaccatcttcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaaggttgtgatagctaaatgtaaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328333 |
tatcaccatcttcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaaggttgtgatagctaaatgtaaa |
7328234 |
T |
|
| Q |
305 |
gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328233 |
gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac |
7328183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 7310936 - 7311275
Alignment:
| Q |
16 |
aagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatat |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7310936 |
aagtacataaactgaaataaatattatgttagaaaaaaacttactttcaataggttgaaaccagactttcgacataatccttgatagagaaccaacatat |
7311035 |
T |
|
| Q |
116 |
ctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatct |
215 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
7311036 |
ctttttgttaactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttccgaatactattgtatcaccatct |
7311135 |
T |
|
| Q |
216 |
tcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaaggttgtgatagctaaatgtaaagaatttagtcc |
315 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||| || | ||||| |
|
|
| T |
7311136 |
tcagaaagatgcaacggctttaatttcaacctcgagtaaacaactcttgaatttaaattcattcgaagattgtgatagctaaatgtaaataactgagtcc |
7311235 |
T |
|
| Q |
316 |
aagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
7311236 |
aagaccggtcgtctccaaattctgtcatcttccatataac |
7311275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 7306378 - 7306603
Alignment:
| Q |
10 |
aaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtacca |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
7306378 |
aaaaccaagtacataaattgaaataaatattatgttggagaaaaacctacgttcaataggttgagaccagactttcgacataatccttgatagagaacca |
7306477 |
T |
|
| Q |
110 |
acatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatca |
209 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7306478 |
acatatctttttgttgactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttgcgaatacgattgtatca |
7306577 |
T |
|
| Q |
210 |
ccatcttcagaaagatgcaatgcctt |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7306578 |
ccatcttcagaaagatgcaatgcctt |
7306603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 47 - 244
Target Start/End: Original strand, 35205658 - 35205863
Alignment:
| Q |
47 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
146 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||||||| ||||||| | ||||| ||||| |||| |
|
|
| T |
35205658 |
gagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacatatcttattgttaattgaagatttcagtactcta |
35205757 |
T |
|
| Q |
147 |
ttagttctcaagttatagag-----aattgcttggttatgtaggcagct---tgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaa |
238 |
Q |
| |
|
|| |||||| |||||||||| |||| |||||| | |||| | | ||||||||||| |||||||||||| |||||||||||||||| | |||| |
|
|
| T |
35205758 |
ttggttctccagttatagagaatataattacttggtgttttaggttgtttgctgcgaatacgagtgtatcaccatcctcagaaagatgcaatggcattaa |
35205857 |
T |
|
| Q |
239 |
tttcaa |
244 |
Q |
| |
|
| |||| |
|
|
| T |
35205858 |
tatcaa |
35205863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 20415161 - 20414999
Alignment:
| Q |
69 |
gttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaa |
168 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||| | || ||||||||||| | || || || | ||||| ||||| | |||||||||| |
|
|
| T |
20415161 |
gttgaaaccagactttcaacataacagttgatagagaaccaacatttgttattgttaactctgggtttcaatactatattatttctccaattatagagaa |
20415062 |
T |
|
| Q |
169 |
ttgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatg |
231 |
Q |
| |
|
||||| ||| ||||||| | |||||||||| | ||||||||||| || |||||||||||| |
|
|
| T |
20415061 |
ttgctcggtcttgtaggctgtttgcgaatacaagtgtatcaccatttttgaaaagatgcaatg |
20414999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 35205919 - 35205989
Alignment:
| Q |
285 |
ttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
35205919 |
ttgtgatagctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataac |
35205989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 244
Target Start/End: Original strand, 21210247 - 21210420
Alignment:
| Q |
70 |
ttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaat |
169 |
Q |
| |
|
|||||||||||||| |||||||||||| | || || |||||| |||||| | ||||| | | |||| ||||| | ||||| |||| |||||||| |||| |
|
|
| T |
21210247 |
ttgaaaccagactt-cgacataatcctcggtacagaaccaacgtatcttatggttaattttggatttcagtactgtattatttctgaagttatatagaac |
21210345 |
T |
|
| Q |
170 |
tgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaa |
244 |
Q |
| |
|
||||||||| || ||| | || ||||||| ||||||||| || |||||||||||||| | |||||||||||| |
|
|
| T |
21210346 |
tgcttggttttgcaggttgtttacgaatactattgtatcaatattttcagaaagatgcaccggctttaatttcaa |
21210420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 21210476 - 21210546
Alignment:
| Q |
285 |
ttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
21210476 |
ttgtgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataac |
21210546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 20414971 - 20414888
Alignment:
| Q |
271 |
aattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataa |
354 |
Q |
| |
|
|||||||| ||||||| | || | ||||| ||| ||||| |||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
20414971 |
aattcactcgaaggttatcattgttaaatttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataa |
20414888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 13888093 - 13888159
Alignment:
| Q |
289 |
gatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||| | || |||||||||| |||||| ||||||||||| |
|
|
| T |
13888093 |
gatagctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataac |
13888159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 20456552 - 20456510
Alignment:
| Q |
313 |
tccaagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
20456552 |
tccaagacttgtcatccccaaattttgtcatcttccatataac |
20456510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 21218469 - 21218553
Alignment:
| Q |
48 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctag |
132 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| | || ||| |||||| |||||||||||||| ||||| |
|
|
| T |
21218469 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctag |
21218553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 21218709 - 21218773
Alignment:
| Q |
291 |
tagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
||||||||| | | ||||| |||||||||| | |||||||||||||| ||||| | ||||||||| |
|
|
| T |
21218709 |
tagctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataac |
21218773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 31442749 - 31442874
Alignment:
| Q |
47 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
146 |
Q |
| |
|
||||| ||||||| |||| | |||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||| || || || |||| |
|
|
| T |
31442749 |
gagaagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactcta |
31442848 |
T |
|
| Q |
147 |
ttagttctcaagttatagagaattgc |
172 |
Q |
| |
|
||| ||||| | |||||||||||||| |
|
|
| T |
31442849 |
ttatttctccaattatagagaattgc |
31442874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 355
Target Start/End: Complemental strand, 24292 - 24210
Alignment:
| Q |
273 |
ttcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
|||| |||||| | ||||||||||||| ||| ||||| ||| |||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
24292 |
ttcatttgaagatcgtgatagctaaatttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataac |
24210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 24491 - 24360
Alignment:
| Q |
47 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
146 |
Q |
| |
|
||||| ||||||| ||| || |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||| |||| || || || |||| |
|
|
| T |
24491 |
gagaagaacttactctcaacaagttggaaccatgctttcaacataattgtttatagatcaccaacatatctttttgttaaccctagttttcactactcta |
24392 |
T |
|
| Q |
147 |
ttagttctcaagttatagagaattgcttggtt |
178 |
Q |
| |
|
||| || || | ||||||||||||||| |||| |
|
|
| T |
24391 |
ttatttatccaattatagagaattgctcggtt |
24360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 42298166 - 42298115
Alignment:
| Q |
305 |
gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataact |
356 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
42298166 |
gaattgagtccaagaattttcatctccaaattctatcatcttccatataact |
42298115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 42298420 - 42298342
Alignment:
| Q |
48 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaa |
126 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| || || ||| |||||||||||||| |||||| |
|
|
| T |
42298420 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaa |
42298342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 4192 - 4142
Alignment:
| Q |
305 |
gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataac |
355 |
Q |
| |
|
||||| ||||||||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
4192 |
gaattgagtccaagaattttcatttccaaattctgtcatcttccatataac |
4142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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