View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_13 (Length: 338)
Name: NF4272_low_13
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 35816511 - 35816197
Alignment:
| Q |
13 |
cagaacatatccatttcccacattatctaaacaggaaccactcacccaaaacacagaacataccctttttgtcccaatccataaacttaaatattcacac |
112 |
Q |
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| T |
35816511 |
cagaacatatccatttcccacattacctaaacaggaaccactcacccaaaacacagaacataccctttttgtcccaatccataaacttaaatattcacac |
35816412 |
T |
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| Q |
113 |
caatctggtacaaaacaacatatcatgtctttccaagaataatatctttgataa------aaaataacaactgtgtatactatacagaccataaattaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
35816411 |
caatctggtacaaaacaacatatcatgtctttccaagaataatatctttgataaaaaaaaaaaaaaacaactgtgtatactatacagaccataaattaat |
35816312 |
T |
|
| Q |
207 |
ccttattgaggaatttcatcaaatgcatcaatctacaaataacaagacagccatgttaatctacaatcacaccaatcattcttcacttgcatctagcatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35816311 |
ccttattgaggaatttcatcaaatgcatcaatctacaaataacaagacagccatgttaatctacaatcacaccaatcattcttcacttgcatctagcatt |
35816212 |
T |
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| Q |
307 |
caaccactgcaaaat |
321 |
Q |
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||||||||||||||| |
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| T |
35816211 |
caaccactgcaaaat |
35816197 |
T |
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