View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4272_low_15 (Length: 331)
Name: NF4272_low_15
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 4838946 - 4838643
Alignment:
| Q |
11 |
cataggttgaagtttaaaacttttctcaccttcttaataatgtgtctgtagggatcaaaccagagtctttctctacaaacttagtgtttaaaaaacttaa |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4838946 |
cataggttgaagtttaaa-cttttctcaccttcttaataatgtgtctgtagggatcaaaccagagtctttctctacaaacttagtgtttaaaaaacttaa |
4838848 |
T |
|
| Q |
111 |
ctacacttgataatttaagactttgaatttcttttttcaaatttctccaacttagagcaacttgaagtggggaccaggccagtgaatgaaggacagagca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4838847 |
ctacacttgataatttaagactttgaatttcttttttcaaatttctccaacttagagcaacttgaagtggggaccaggccagtgaatgaaggacagagca |
4838748 |
T |
|
| Q |
211 |
catagagtctagaggaggaagatgaacagtgatgtggtcgaaaatgagagttgaaaagtagtcatgcagagtccataaatatatgtgcagtgcagctctt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4838747 |
catagagtctagaggaggaagatgaacagtgatgtggtcgaaaatgagagttgaaaagtagtcatgcagagcccataaatatatgtgcagtgcagctctt |
4838648 |
T |
|
| Q |
311 |
cttag |
315 |
Q |
| |
|
||||| |
|
|
| T |
4838647 |
cttag |
4838643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University