View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_16 (Length: 324)
Name: NF4272_low_16
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 2792295 - 2792594
Alignment:
| Q |
8 |
attatactgcaactgcaatttaaaaccatgttcgtgaataaaggaattaacgnnnnnnncctgctttctttggaacagctgtccaatttccaattccatg |
107 |
Q |
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| T |
2792295 |
attatactgcaactgcaatttaaaaccatgttcgtgaataaaggaattaacgaaaaaa-cctgctttctttggaacagctgtccaatttccaattccatg |
2792393 |
T |
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| Q |
108 |
attggctacataagcaagtattttagcatcttcctcaggagtccataaacctcttttcacattggtcttatcacaacaaggaggccttcccannnnnnnc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2792394 |
attggctacataagcaagtattttagcatcttcctcaggagtccataaacctcttttcacattggtcttatcacaacaaggaggccttcccatttttttc |
2792493 |
T |
|
| Q |
208 |
ttgaataagaaagtttagacaaagaaaaatgtgcaaagatgaataatgtgagaagaaagagttagtgagtgaattatgtaatagtgatgcaatgtgcatt |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2792494 |
ttgaatgagaaagtttagacaaagaaaaatgtgcaaagatgaataatgtgagaagaaagagttagtgaatgaattatgtaatagtgatgcaatgtgcatt |
2792593 |
T |
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