View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_17 (Length: 322)
Name: NF4272_low_17
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 50491486 - 50491790
Alignment:
| Q |
1 |
tatcaacaaccaacaccttatacttcataagtcattataagccaagaactcaaccaacaataaatctaagtatttctccctaactcgtttaaaataagca |
100 |
Q |
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| T |
50491486 |
tatcaacaaccaacaccttatacttcataagtcattataagccaagaactcaaccaacaataaatctaagtatttctccctaactcgcttaaaataagca |
50491585 |
T |
|
| Q |
101 |
tataactgttaaccagggcgaattgtgatatatcctaatccatgttcattctcaagaacaatcagaaaaaccgtcactgacaaagagtgaagttaccnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
50491586 |
tataactgttaaccagggcgaattgtgatatatcctaatccatgttcattctcaagaacaatcagaaaaaacgtcactaacaaagagtgaagttacc--- |
50491682 |
T |
|
| Q |
201 |
nnnnnnnnnnnnncatagcatttgcaaacaatttgataaaatttaatcacaaacaataattcaacctaaaccctaaatagtagttagtagtaactaagca |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50491683 |
aaaaaaaaaaaaacatagcatttacaaacaatttgataaaatttaatcacaaacaataattcaacctaaaccctaaatagtagttagtagtaactaagca |
50491782 |
T |
|
| Q |
301 |
tgaataat |
308 |
Q |
| |
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|||||||| |
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|
| T |
50491783 |
tgaataat |
50491790 |
T |
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