View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4272_low_19 (Length: 304)

Name: NF4272_low_19
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4272_low_19
NF4272_low_19
[»] chr6 (2 HSPs)
chr6 (4-300)||(8781319-8781616)
chr6 (4-300)||(7112528-7112826)
[»] chr3 (2 HSPs)
chr3 (263-296)||(18180550-18180583)
chr3 (263-300)||(48353742-48353779)
[»] chr7 (5 HSPs)
chr7 (255-298)||(18233611-18233654)
chr7 (260-294)||(37775990-37776024)
chr7 (261-294)||(31837760-31837793)
chr7 (258-294)||(8204406-8204442)
chr7 (258-294)||(8216883-8216919)
[»] chr8 (1 HSPs)
chr8 (263-300)||(34201057-34201094)
[»] chr5 (1 HSPs)
chr5 (258-299)||(43208286-43208327)
[»] chr4 (1 HSPs)
chr4 (258-294)||(20119951-20119987)
[»] chr1 (3 HSPs)
chr1 (263-299)||(28460779-28460815)
chr1 (258-298)||(40747786-40747826)
chr1 (263-299)||(41017416-41017452)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 8781616 - 8781319
Alignment:
Q  4 agacagtaacatttgttggggatgacttgtgtttttcttaagagaaagagatgtatttagaagaggaatgaatatgaaagatttattattcaattactca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8781616 agacagtaacatttgttggggatgacttgtgtttttcttaagagaaagagatgtatttagaagaggaatgaatatgaaagatttattattcaattactca 8781517  T
Q  104 aaaggtaatacatatacacctattaatgttgttgcttgctctgcaagtaactgttttctctaactaactaaaacagaaaaaataggaaaattagttacaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8781516 aaaggtaatacatatacacctattaatgttgttgcttgctctgcaagtaactgttttctctaactaactaaaacagaaaaaataggaaaattaggtacaa 8781417  T
Q  204 cacgcacaatctaa-attgaattactaattacaacaaaattcacatgttcatacagatagtaatttgagaaaatgaaataattaaatgtaattatatg 300  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8781416 cacgcacaatctaagtttgaattactaattacaacaaaattgacatgttcatacagatagtaatttgagaaaatgaaataattaaatgtaattatatg 8781319  T

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Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 4 - 300
Target Start/End: Original strand, 7112528 - 7112826
Alignment:
Q  4 agacagtaacatttgttggggatgacttgtgtttttcttaagagaaagagatgtatttagaagaggaatgaatatgaaagatttattattcaattactca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7112528 agacagtaacatttgttggggatgacttgtgtttttcttaagagaaagagatgtatttagaagaggaatgaatatgaaagatttattattcaattactca 7112627  T
Q  104 aaaggtaatacatatacacctattaatgttgttgcttgctctgcaagtaactgttttctctaactaactaaaacag-aaaaaataggaaaattagttaca 202  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  7112628 aaaggtaatacatatacccctgttaatgttgttgcttgctctgcaagtaactgttttctctaactaactaaaacagaaaaaaataggaaaattaggtaca 7112727  T
Q  203 acacgcacaatctaa-attgaattactaattacaacaaaattcacatgttcatacagatagtaatttgagaaaatgaaataattaaatgtaattatatg 300  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7112728 acacgcacaatctaagtttgaattactaattacaacaaaattgacatgttcatacagatagtaatttgagaaaatgaaataattaaatgtaattatatg 7112826  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 18180550 - 18180583
Alignment:
Q  263 taatttgagaaaatgaaataattaaatgtaatta 296  Q
    ||||||||||||||||||||||||||||||||||    
T  18180550 taatttgagaaaatgaaataattaaatgtaatta 18180583  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 48353779 - 48353742
Alignment:
Q  263 taatttgagaaaatgaaataattaaatgtaattatatg 300  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  48353779 taatttgagaaaatcaaataattaattgtaattatatg 48353742  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 18233654 - 18233611
Alignment:
Q  255 acagatagtaatttgagaaaatgaaataattaaatgtaattata 298  Q
    |||||||||||||||||||||||| |||||| | ||||||||||    
T  18233654 acagatagtaatttgagaaaatgacataattcagtgtaattata 18233611  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 37775990 - 37776024
Alignment:
Q  260 tagtaatttgagaaaatgaaataattaaatgtaat 294  Q
    ||||||||||||||||||| |||||||||||||||    
T  37775990 tagtaatttgagaaaatgacataattaaatgtaat 37776024  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 31837760 - 31837793
Alignment:
Q  261 agtaatttgagaaaatgaaataattaaatgtaat 294  Q
    ||||||||||||||||||||||||| ||||||||    
T  31837760 agtaatttgagaaaatgaaataattgaatgtaat 31837793  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 8204442 - 8204406
Alignment:
Q  258 gatagtaatttgagaaaatgaaataattaaatgtaat 294  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  8204442 gatagtaatttgagaaaatgatataattgaatgtaat 8204406  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 8216919 - 8216883
Alignment:
Q  258 gatagtaatttgagaaaatgaaataattaaatgtaat 294  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  8216919 gatagtaatttgagaaaatgatataattgaatgtaat 8216883  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 34201094 - 34201057
Alignment:
Q  263 taatttgagaaaatgaaataattaaatgtaattatatg 300  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  34201094 taatttgagaaaatgacataattcaatgtaattatatg 34201057  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 43208327 - 43208286
Alignment:
Q  258 gatagtaatttgagaaaatgaaataattaaatgtaattatat 299  Q
    ||||||||||||||||||||| |||||| |||||||| ||||    
T  43208327 gatagtaatttgagaaaatgacataattcaatgtaatcatat 43208286  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 20119951 - 20119987
Alignment:
Q  258 gatagtaatttgagaaaatgaaataattaaatgtaat 294  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  20119951 gataataatttgagaaaatgaaataatttaatgtaat 20119987  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 28460779 - 28460815
Alignment:
Q  263 taatttgagaaaatgaaataattaaatgtaattatat 299  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  28460779 taatttcagaaaatcaaataattaaatgtaattatat 28460815  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 40747826 - 40747786
Alignment:
Q  258 gatagtaatttgagaaaatgaaataattaaatgtaattata 298  Q
    |||| |||||||||||||||| |||||| ||||||||||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaattata 40747786  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 41017452 - 41017416
Alignment:
Q  263 taatttgagaaaatgaaataattaaatgtaattatat 299  Q
    |||||||||||||||| |||||| |||||||||||||    
T  41017452 taatttgagaaaatgacataatttaatgtaattatat 41017416  T

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