View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_21 (Length: 297)
Name: NF4272_low_21
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 8337174 - 8337459
Alignment:
| Q |
1 |
tgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatattgtaaaataagcttaaagtgaataagtaacnnnnnnnnntt |
100 |
Q |
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| T |
8337174 |
tgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatatggtaaaataagcttaaagtgaataagtaacaaaataaa-tt |
8337272 |
T |
|
| Q |
101 |
tgttttcataaacaaaagtaaaatcaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcagc |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8337273 |
tgttttcataaacaaaagtaaaaccaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatgtcccataccttagcatcaacaatcagc |
8337372 |
T |
|
| Q |
201 |
aattccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatctttttgatctgtg |
287 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8337373 |
aattccaaatgttcttttccatccttcactgctgtccatttatctttgactcgaactgacagcttccacaaatcttttttatctgtg |
8337459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 100 - 287
Target Start/End: Original strand, 10234550 - 10234737
Alignment:
| Q |
100 |
ttgttttcataaacaaaagtaaaatcaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcag |
199 |
Q |
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|||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234550 |
ttgttttcataaacaaaagtaaaaccaatcagtgaccagaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcag |
10234649 |
T |
|
| Q |
200 |
caattccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatctttttgatctgtg |
287 |
Q |
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| T |
10234650 |
caattccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatctttttgatctgtg |
10234737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10234290 - 10234378
Alignment:
| Q |
1 |
tgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatattgtaaaataagcttaaagtgaataagtaac |
89 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10234290 |
tgtcataaacagatttgtatgcagttggaatgagtacttgaatatcatggccctaatatggtaaaataagcttaaagtgaataagtaac |
10234378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 28729082 - 28729012
Alignment:
| Q |
180 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactactgtccatttatctttgac |
250 |
Q |
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|||||| |||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| ||||| |
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| T |
28729082 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatccttgac |
28729012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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