View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4272_low_24 (Length: 281)

Name: NF4272_low_24
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4272_low_24
NF4272_low_24
[»] chr6 (4 HSPs)
chr6 (1-137)||(24946705-24946841)
chr6 (1-88)||(9320450-9320537)
chr6 (143-236)||(8551569-8551662)
chr6 (81-141)||(9320380-9320441)
[»] chr5 (4 HSPs)
chr5 (142-273)||(25439358-25439489)
chr5 (173-271)||(20283718-20283815)
chr5 (146-215)||(4154704-4154773)
chr5 (203-268)||(4551111-4551176)
[»] chr4 (5 HSPs)
chr4 (1-137)||(41456513-41456649)
chr4 (6-70)||(20702965-20703029)
chr4 (1-66)||(20707507-20707572)
chr4 (81-122)||(20707431-20707472)
chr4 (187-215)||(38837589-38837617)
[»] chr7 (1 HSPs)
chr7 (137-236)||(14699639-14699738)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24946841 - 24946705
Alignment:
Q  1 tttatatacactctagaggttaaatacaatatggaagttacaaggacattaatcagctctctagttcctacataaatgtgattaactattgatcttctag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24946841 tttatatacactctagaggttaaatacaatatggaagttacaaggacattaatcagctttctagttcctacataaatgtgattaactattgatcttctag 24946742  T
Q  101 ctgcatgaataactgtacatattcctagatatttatt 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  24946741 ctgcatgaataactgtacatattcctagatatttatt 24946705  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9320537 - 9320450
Alignment:
Q  1 tttatatacactctagaggttaaatacaatatggaagttacaaggacattaatcagctctctagttcctacataaatgtgattaacta 88  Q
    |||||||||||||||||   |||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||| ||||    
T  9320537 tttatatacactctagaaagtaaatacaatatgggagttacaaggacattaataagctttctggttcctacataaatgtgatttacta 9320450  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 8551569 - 8551662
Alignment:
Q  143 agaaatgataaatagacacaaaattctgaccacaaaatcaacaccatgggtaattttgatatttcaaccttaattccaggacagttcggtaaaa 236  Q
    ||||||||||| ||||||||||||| |   ||||| | |||||||||||| ||||||| ||||||||||| || || ||| ||||| |||||||    
T  8551569 agaaatgataattagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcaagggcagtttggtaaaa 8551662  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 9320441 - 9320380
Alignment:
Q  81 attaactattgatcttctagctgcatgaataactgtacatattcct-agatatttattttat 141  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||| || ||||||||||||    
T  9320441 attaactattgatcttctacttgcatgaataactatacatattcctaaggtatttattttat 9320380  T

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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 25439358 - 25439489
Alignment:
Q  142 gagaaatgataaatagacacaaaattctgaccacaaaatcaacaccatgggtaattttgatatttcaaccttaattccaggacagttcggtaaaaatagc 241  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  25439358 gagaaatgataaatagacacaaaattctggccacaaaatcaacaccatgggtagttttgatatttcaaccttaattccaggacagttcggtaaaaataga 25439457  T
Q  242 acacaccatcttctttctctcacctctgtgct 273  Q
    ||||||||||||||||||||||||||||||||    
T  25439458 acacaccatcttctttctctcacctctgtgct 25439489  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 20283815 - 20283718
Alignment:
Q  173 cacaaaatcaacaccatgggtaattttgatatttcaaccttaattccaggacagttcggtaaaaatagcacacaccatcttctttctctcacctctgtg 271  Q
    |||||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||||||||  || |||| |||||||||||||  |||||||    
T  20283815 cacaaaatcaacaccatgggtagttttgacatttccaccttaaatccagggcagtttggtaaaaatactac-caccctcttctttctctcctctctgtg 20283718  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 4154773 - 4154704
Alignment:
Q  146 aatgataaatagacacaaaattctgaccacaaaatcaacaccatgggtaattttgatatttcaaccttaa 215  Q
    |||||||| ||||||||||||| |   ||||| | ||||||||| || ||||||| ||||||||||||||    
T  4154773 aatgataactagacacaaaattttagacacaataccaacaccataggcaattttgttatttcaaccttaa 4154704  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 4551176 - 4551111
Alignment:
Q  203 atttcaaccttaattccaggacagttcggtaaaaatagcacacaccatcttctttctctcacctct 268  Q
    ||||||||||||| ||| | ||||||  |||||||||  ||||||||| ||||||||||| |||||    
T  4551176 atttcaaccttaaatcccgaacagttttgtaaaaatattacacaccatattctttctctctcctct 4551111  T

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Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 41456513 - 41456649
Alignment:
Q  1 tttatatacactctagaggttaaatacaatatggaagttacaaggacattaatcagctctctagttcctacataaatgtgattaactattgatcttctag 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41456513 tttatatacactctagaggttaaatacaatatgggagttacaagaacattaatcaactttctagttcctacataaatgtgattaactattgatcttctag 41456612  T
Q  101 ctgcatgaataactgtacatattcctagatatttatt 137  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  41456613 ctgcatgaataattgtacatattcctaggtatttatt 41456649  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 20703029 - 20702965
Alignment:
Q  6 atacactctagaggttaaatacaatatggaagttacaaggacattaatcagctctctagttccta 70  Q
    |||||||||||||  |||||||||||||| ||||||||| | ||||||||||| |||||||||||    
T  20703029 atacactctagagagtaaatacaatatgggagttacaagaatattaatcagctttctagttccta 20702965  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20707572 - 20707507
Alignment:
Q  1 tttatatacactctagaggttaaatacaatatggaagttacaaggacattaatcagctctctagtt 66  Q
    ||||||||||||||||||  ||| |||||||||| ||||||||| | ||||||||||| |||||||    
T  20707572 tttatatacactctagagagtaactacaatatgggagttacaagaatattaatcagctttctagtt 20707507  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 20707472 - 20707431
Alignment:
Q  81 attaactattgatcttctagctgcatgaataactgtacatat 122  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  20707472 attaactattgatcttctagctacatcaataactgtacatat 20707431  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 38837617 - 38837589
Alignment:
Q  187 catgggtaattttgatatttcaaccttaa 215  Q
    |||||||||||||||||||||||||||||    
T  38837617 catgggtaattttgatatttcaaccttaa 38837589  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 14699738 - 14699639
Alignment:
Q  137 tttatgagaaatgataaatagacacaaaattctgaccacaaaatcaacaccatgggtaattttgatatttcaaccttaattccaggacagttcggtaaaa 236  Q
    |||||||| |||||||| ||||||||||||| |   ||||| | |||||||||||| ||||||| ||||||||||| || || ||| ||||| |||||||    
T  14699738 tttatgaggaatgataactagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcgagggcagtttggtaaaa 14699639  T

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