View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_29 (Length: 260)
Name: NF4272_low_29
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 247
Target Start/End: Original strand, 33441865 - 33442087
Alignment:
| Q |
25 |
actagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgt |
124 |
Q |
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| T |
33441865 |
actagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgt |
33441964 |
T |
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| Q |
125 |
tttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttat |
224 |
Q |
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| T |
33441965 |
tttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttgt |
33442064 |
T |
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| Q |
225 |
cttgtccactagttaacacaggt |
247 |
Q |
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|||| ||||| |||||||||||| |
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| T |
33442065 |
cttgcccactggttaacacaggt |
33442087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 247
Target Start/End: Original strand, 33452085 - 33452307
Alignment:
| Q |
25 |
actagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgt |
124 |
Q |
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| T |
33452085 |
actagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgt |
33452184 |
T |
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| Q |
125 |
tttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttat |
224 |
Q |
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| T |
33452185 |
tttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttgt |
33452284 |
T |
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| Q |
225 |
cttgtccactagttaacacaggt |
247 |
Q |
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| T |
33452285 |
cttgcccactggttaacacaggt |
33452307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 33399629 - 33399776
Alignment:
| Q |
105 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
204 |
Q |
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||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccata |
33399728 |
T |
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| Q |
205 |
ggttgtaattataattttatcttgtccactagttaacacaggttctgc |
252 |
Q |
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| T |
33399729 |
ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgc |
33399776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 33395729 - 33395880
Alignment:
| Q |
92 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
191 |
Q |
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|||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| | |||||||| | | ||| ||||||||||| |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
33395828 |
T |
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| Q |
192 |
atcttctcccataggttgtaattataattttatcttgtccactagttaacac |
243 |
Q |
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||||||| ||||||||||| | || |||| |||| ||||||||||||||||| |
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| T |
33395829 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacac |
33395880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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