View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_3 (Length: 573)
Name: NF4272_low_3
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 26 - 563
Target Start/End: Original strand, 49654250 - 49654787
Alignment:
| Q |
26 |
ccaagaaactcagcaaaagaaagaccattgttctgcaaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaac |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654250 |
ccaagaaactcagcaaaagaaagaccattgttctgcaaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaac |
49654349 |
T |
|
| Q |
126 |
ggtaaaagcaagagtactaacacaaaaaccagtgctggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaggagtggtcaaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49654350 |
ggtaaaagcaagagtactaacacaaaaaccagtgctggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaagagtggtcaaa |
49654449 |
T |
|
| Q |
226 |
gtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctactggtgcacctgcagacac |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
49654450 |
gtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctaccggtgcacctgcacacac |
49654549 |
T |
|
| Q |
326 |
tggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcct |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654550 |
tggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcct |
49654649 |
T |
|
| Q |
426 |
cctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggcc |
525 |
Q |
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| T |
49654650 |
cctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggcc |
49654749 |
T |
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| Q |
526 |
ttgatcgtgacccttatcagtttcaatctacacctttg |
563 |
Q |
| |
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| T |
49654750 |
ttgatcgtgacccttatcagtttcaatctacacctttg |
49654787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 392 - 563
Target Start/End: Original strand, 16486263 - 16486434
Alignment:
| Q |
392 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
491 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
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| Q |
492 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
563 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
16486434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 392 - 563
Target Start/End: Complemental strand, 21816647 - 21816476
Alignment:
| Q |
392 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
491 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
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| Q |
492 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
563 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
21816476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 394
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
363 |
caagtgaatctcagccctacacgtcagcaatc |
394 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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