View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_35 (Length: 239)
Name: NF4272_low_35
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_35 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 8336952 - 8337174
Alignment:
| Q |
17 |
acttactaactaataggtcaggtcgccatttgccgaaaactatttcagcaaaaggcttatacttgatgtgcgtattagggatgtcattgaggttgacatc |
116 |
Q |
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| T |
8336952 |
acttactaaataataggtcaggtcgccattttccgaaaactatttcagcaaaaggcttatacttgatgtgcgtattagggatgtcattgaggttgacatc |
8337051 |
T |
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| Q |
117 |
aatagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacttgaaagttagttaaggtatat |
216 |
Q |
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| T |
8337052 |
aacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgagcacttgaaagttagttaaggtatat |
8337151 |
T |
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| Q |
217 |
gtagaattaacttcaagtgtttt |
239 |
Q |
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| T |
8337152 |
gtagaattaacttcaagtgtttt |
8337174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 10234068 - 10234290
Alignment:
| Q |
17 |
acttactaactaataggtcaggtcgccatttgccgaaaactatttcagcaaaaggcttatacttgatgtgcgtattagggatgtcattgaggttgacatc |
116 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10234068 |
acttactaactaataggtcaggtcgccatttgctggaaactatttcagcaaaaggcttatacttgatgtgcgtattagagatgtcattgaggttgacatc |
10234167 |
T |
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| Q |
117 |
aatagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacttgaaagttagttaaggtatat |
216 |
Q |
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| T |
10234168 |
aacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacatgaaagttagttaaggtatat |
10234267 |
T |
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| Q |
217 |
gtagaattaacttcaagtgtttt |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
10234268 |
gtagaattaacttcaagtgtttt |
10234290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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