View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_5 (Length: 517)
Name: NF4272_low_5
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 52577689 - 52577183
Alignment:
| Q |
1 |
tttgtgctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggg-tgggtgttggagaggtaagggtgctcnnnnnnnnctcta |
99 |
Q |
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| T |
52577689 |
tttgtgctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttcgagaggtaagggtgctcttttttt--tcaa |
52577592 |
T |
|
| Q |
100 |
taaacataactggaatatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttccttaaataagaattctggggaag |
199 |
Q |
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| T |
52577591 |
taaacataactggaatatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttccttaaataagaattctggggaag |
52577492 |
T |
|
| Q |
200 |
aagatccagaactagaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577491 |
aagatccagaactagaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttc |
52577392 |
T |
|
| Q |
300 |
tcatttgaaattaannnnnnnagggagtactgtttgaagatgatttaaatgtaaacaattatcttacaaggttttatttttcgtatgtaaacaacttatt |
399 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
52577391 |
tcatttgaaattaatttttttaaggagtactgtttgaagatgatttaaatgtaaacaattatcttactaggttttatttttggtatgtaaacaacttatt |
52577292 |
T |
|
| Q |
400 |
ctctacagactgtgactgatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatttaatttaattgccac |
499 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52577291 |
ctctacagactgtgacggatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatgtaatttaattgccac |
52577192 |
T |
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| Q |
500 |
aggttctgc |
508 |
Q |
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| T |
52577191 |
aagttctgc |
52577183 |
T |
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