View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4272_low_6 (Length: 494)
Name: NF4272_low_6
Description: NF4272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4272_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 22 - 491
Target Start/End: Original strand, 51318096 - 51318577
Alignment:
| Q |
22 |
ttatattttataagactctaaattactatcatcctttttaaataattgaaggttaagataacaaagaaaaatacgatgatgggttaaatttatatgtact |
121 |
Q |
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| T |
51318096 |
ttatattttataagactctaaattactatcatcctttttaaataatggaaggttaagataacaaagaaaaatacgatgatgggttaaatttatatgtact |
51318195 |
T |
|
| Q |
122 |
atcggcataaaaatgatcttattgaatgtaa--------gcgta-----------tgtatatgaaaaggaaaattaaaatattgaaacctcgggaaaacc |
202 |
Q |
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| T |
51318196 |
gtcggcataaaaatgatcttattgattgtgattaacttggtgtaaatttttacaatgtatatgaaaaggaaaattaaaatattgaaacctcgggaaaacc |
51318295 |
T |
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| Q |
203 |
ctttcctttgtactatctattgtgtagtaactagtaagtataaaccctaggtgtgcgaaaatttggggggtggcgccgatttgttcttcaatggcttctc |
302 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51318296 |
ctttcctttgtactatctattgtgtggtaa-------gtataaaccctaggtgtgcgaaaatttggggggtggcgccgatttgttcttcaatggcttctc |
51318388 |
T |
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| Q |
303 |
gttacagatcattttctcaaccagcattctctctgatcaaatccaccatcaacaaacccaaatcctcctcttcctccttctcaccctttctcctcaaaac |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51318389 |
gttacagatcattttctcaaccagcattctctctgatcaaatccaccatcaacaaacccaaatcctcctcttcctccttctcaccctttctcctcaaaac |
51318488 |
T |
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| Q |
403 |
tcgcacttccgtcaccgtcaggtaactcctcttccacccttttcttccattttaacgtaactttaattctcactcttctctgctcctcc |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
51318489 |
tcgcacttccgtcaccgtcaggtaactcctcttccacccttttcttccattttaacgtaacgttaattctcactcttctcttctcctcc |
51318577 |
T |
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