View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4273_high_9 (Length: 227)

Name: NF4273_high_9
Description: NF4273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4273_high_9
NF4273_high_9
[»] chr1 (2 HSPs)
chr1 (19-212)||(7098794-7098987)
chr1 (26-209)||(7582262-7582445)
[»] chr4 (3 HSPs)
chr4 (19-212)||(13615983-13616174)
chr4 (126-212)||(20297131-20297217)
chr4 (121-210)||(52351438-52351527)
[»] chr5 (22 HSPs)
chr5 (26-204)||(17982304-17982482)
chr5 (120-212)||(17418697-17418789)
chr5 (121-199)||(30242925-30243003)
chr5 (122-212)||(30749116-30749206)
chr5 (121-212)||(30435294-30435385)
chr5 (121-199)||(29871658-29871736)
chr5 (132-198)||(30206008-30206074)
chr5 (121-199)||(30482876-30482954)
chr5 (120-212)||(30713962-30714054)
chr5 (122-212)||(30677708-30677798)
chr5 (122-210)||(30399550-30399638)
chr5 (120-199)||(30059840-30059919)
chr5 (26-85)||(30243027-30243086)
chr5 (121-200)||(30474853-30474932)
chr5 (122-212)||(29852784-29852874)
chr5 (121-199)||(30339078-30339156)
chr5 (23-69)||(30522302-30522348)
chr5 (23-69)||(30562642-30562688)
chr5 (26-85)||(17418824-17418883)
chr5 (25-76)||(30474760-30474811)
chr5 (26-76)||(30399454-30399504)
chr5 (26-94)||(30059746-30059814)
[»] chr7 (1 HSPs)
chr7 (122-210)||(26706817-26706905)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 7098794 - 7098987
Alignment:
Q  19 aagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggtgtatcaccacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098794 aagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggtgtatcaccacc 7098893  T
Q  119 cttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098894 cttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 7098987  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 7582445 - 7582262
Alignment:
Q  26 tattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggtgtatcaccacccttccat 125  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |||| ||  ||||| |||| || ||||     |  ||||    
T  7582445 tattttcaagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataatagtggtcttaacagatgaatcattgtgcaaccat 7582346  T
Q  126 gacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcct 209  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |||||| ||||||||    
T  7582345 gacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatttggtaagcct 7582262  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 13615983 - 13616174
Alignment:
Q  19 aagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggtgtatcaccacc 118  Q
    |||||| ||||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||| |||| ||| |||||||||| || |||          
T  13615983 aagaatatattttcaagctcttgagatttgga-gaggt-gaagcacttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtg 13616080  T
Q  119 cttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    || |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||    
T  13616081 ctgccatgacaagaataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacctatattttgtaagcctttg 13616174  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 20297217 - 20297131
Alignment:
Q  126 gacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || ||||||||||    
T  20297217 gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttg 20297131  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 52351438 - 52351527
Alignment:
Q  121 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctt 210  Q
    ||||||||| |||||||||   |||||||||||||||||| |||||||| |||  | | |||||||| || | |||||||| || |||||    
T  52351438 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggcctt 52351527  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 17982304 - 17982482
Alignment:
Q  26 tattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggtgtatcaccacccttccat 125  Q
    ||||||||||| ||| |||||| | ||||||||||||||||||| |||  |||||||||| |||| ||| |||||||||| || | |      |  ||||    
T  17982304 tattttcaagcccttaagatttctgtgaggttgaagcacttcaaatacacgatcatcactaataataggggtcttgacagatgaaccttggtgccgccat 17982403  T
Q  126 gacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgta 204  Q
    |||| ||||||||||| ||||||||||||||| || ||||| ||||||| | |||||||||||||||  ||||||||||    
T  17982404 gacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgta 17982482  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 17418789 - 17418697
Alignment:
Q  120 ttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    ||||| |||||||||||||| | ||||||||||||||| || || || ||||||| ||||||||||||| ||||||||| || ||||||||||    
T  17418789 ttccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttg 17418697  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 30243003 - 30242925
Alignment:
Q  121 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 199  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||| ||||||||||||||| ||||||||    
T  30243003 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacatt 30242925  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 30749116 - 30749206
Alignment:
Q  122 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||| ||||||||||||||| |||||||| | ||| ||||||    
T  30749116 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttg 30749206  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 30435294 - 30435385
Alignment:
Q  121 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    |||| ||||||||||||||||  ||||||||||||||| | ||||| ||  ||| |||||||||||||||||||||||| | ||| ||||||    
T  30435294 tccacgacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttg 30435385  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 29871658 - 29871736
Alignment:
Q  121 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 199  Q
    |||||||||||||||||| ||  ||||||||||||||||| ||||| ||  ||| ||||||||||||||| ||||||||    
T  29871658 tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacatt 29871736  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 30206008 - 30206074
Alignment:
Q  132 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacat 198  Q
    |||||||| | |||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacat 30206074  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 30482876 - 30482954
Alignment:
Q  121 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 199  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||| |||||||||||| || ||||||||    
T  30482876 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacatt 30482954  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 30714054 - 30713962
Alignment:
Q  120 ttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    |||||||||||| |||||||||  ||||||||||||||||| ||||| ||  ||| ||||||| ||||||| |||||||| | ||| ||||||    
T  30714054 ttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttg 30713962  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 30677798 - 30677708
Alignment:
Q  122 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    ||||||||||||||||||||  |||||||||||| |||| || || ||  ||| |||||||||||||||| ||||||| | ||| ||||||    
T  30677798 ccatgacaagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacattgtttaatcctttg 30677708  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 30399550 - 30399638
Alignment:
Q  122 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctt 210  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||  ||  ||| ||||| ||||||||| |||| || || ||||||||    
T  30399550 ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagcctt 30399638  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 30059840 - 30059919
Alignment:
Q  120 ttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 199  Q
    |||||||||||| |||||||||  ||||||||||||||||| ||||| ||  ||| ||||||| |||| || ||||||||    
T  30059840 ttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataacctgccaacatt 30059919  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 30243086 - 30243027
Alignment:
Q  26 tattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcact 85  Q
    ||||||||||| |||||||||||  ||||||||||||||||||| |||||| ||| ||||    
T  30243086 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcact 30243027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 30474853 - 30474932
Alignment:
Q  121 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattt 200  Q
    ||||||||||| ||||||| | |||||| ||||||||||| |||||||| | |  ||||||| |||| ||||||||||||    
T  30474853 tccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacattt 30474932  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 29852784 - 29852874
Alignment:
Q  122 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 212  Q
    ||||||||| ||||||||||  | |||| |||||||||| ||||| ||  ||| ||||||||||||||| || |||| || ||||||||||    
T  29852784 ccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttg 29852874  T

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Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 30339156 - 30339078
Alignment:
Q  121 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 199  Q
    |||| ||||||||||||| ||  ||||||||||||||||| ||||| ||  ||| |||||||||||| || ||||||||    
T  30339156 tccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacatt 30339078  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 30522348 - 30522302
Alignment:
Q  23 atgtattttcaagctcttgagatttgtatgaggttgaagcacttcaa 69  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  30522348 atgtattttcaagatcttgagatttgagtgaggttgaagcacttcaa 30522302  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 30562688 - 30562642
Alignment:
Q  23 atgtattttcaagctcttgagatttgtatgaggttgaagcacttcaa 69  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  30562688 atgtattttcaagatcttgagatttgagtgaggttgaagcacttcaa 30562642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 17418883 - 17418824
Alignment:
Q  26 tattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcact 85  Q
    ||||||||||| |||||||||||  ||||||||||||||||||| || ||| ||| ||||    
T  17418883 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagttgctcagcact 17418824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 30474760 - 30474811
Alignment:
Q  25 gtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttg 76  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||| ||||||    
T  30474760 gtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttg 30474811  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 30399454 - 30399504
Alignment:
Q  26 tattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttg 76  Q
    ||||||||||| |||||||||||  ||||||||||||||||| | ||||||    
T  30399454 tattttcaagcacttgagatttgagtgaggttgaagcacttcgagtacttg 30399504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 30059746 - 30059814
Alignment:
Q  26 tattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacagg 94  Q
    |||||||||||  ||||||||||  ||||||||||| ||||||| |||||| ||| |||| | ||||||    
T  30059746 tattttcaagcagttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaacaacagg 30059814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 26706817 - 26706905
Alignment:
Q  122 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctt 210  Q
    |||||||||||||||||  ||||||| |||||| ||||| ||||||||||||| ||||||||||||||| ||||||| || ||||||||    
T  26706817 ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagcctt 26706905  T

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