View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4273_low_2 (Length: 421)
Name: NF4273_low_2
Description: NF4273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4273_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Complemental strand, 47983260 - 47982867
Alignment:
| Q |
10 |
tgatatgaacaacatctttacctcccatcttcaccccaacaactacgtgtgtaccatacttttcaatgaacctgaaaaacatgtttatttagtttaaaac |
109 |
Q |
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| T |
47983260 |
tgatatgaacaacatctttacctcccatcttcaccccaacaactacatgtgtaccatacttttcaatgaacctgaaaaacatgtttatttagtttaaaac |
47983161 |
T |
|
| Q |
110 |
actattaactcggtccaatcaacatataggagaattttattcttatcaaagaaataaagatctaagtaaagcacttcaaacaagaaaaaatgaaataaac |
209 |
Q |
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| T |
47983160 |
actattaactcggtccaatcaacatataggagaattttattcttatcaaagaaataaagatctaagtaaagcatttcaaacaagaaaaaatgaaataaac |
47983061 |
T |
|
| Q |
210 |
tttaagttgaatgttactgctatttaggggaaaatctagaaattatgcactttagcaccaaatgaatgcttattgttttagcaattgtagagcaaggggt |
309 |
Q |
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| T |
47983060 |
tttaagttgaatgttactactatttaggggaaaatatagaaattatgcactttagcactaaatgaatgcttattgttttagcaattgtagagcaaggggt |
47982961 |
T |
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| Q |
310 |
cagtaatcaaagtgattattattgttcataaaaattaaaagtcgaagttctgtaatattttatgatgactattaactagaagaggatgacgcat |
403 |
Q |
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| T |
47982960 |
cagtaatcaaagtgattattactgttcataaaaattaaaagtcgaagttctgtaatattttatgacgactattaactagaagaggatgacgcat |
47982867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 35116942 - 35117333
Alignment:
| Q |
10 |
tgatatgaacaacatctttacctcccatcttcaccccaacaactacgtgtgtaccatacttttcaatgaacctgaaaaac-atgtttatttagtttaaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |
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| T |
35116942 |
tgatatgaacaacatctttacctcccatcttcactccaacaactacgtgtgtaccatacttttcaatgaacctgaagagccatgtttatttagtttaaaa |
35117041 |
T |
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| Q |
109 |
cactattaactcggtccaatcaacatataggagaattttattcttatcaaagaaataaagatctaagtaaagcacttcaaacaagaaaaaatgaaataaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| || ||||||||||||||||||| || || |
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| T |
35117042 |
cactattaactcggtccaatcaacatataggagaattttattgagatcaaataaataaggatctaagtaaggcttttcaaacaagaaaaaatgagatgaa |
35117141 |
T |
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| Q |
209 |
ctttaagttgaatgttactgctatttaggggaaaatctagaaattatgcactttagcaccaaatgaatgcttattgttttagcaattgtagagcaagggg |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
35117142 |
ctttaagttgaatgttactgctattttggggaaaatctagaaatcatgcattttagcaccaaatgaatgcttataattttagcaattatagagaaagggg |
35117241 |
T |
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| Q |
309 |
tcagtaatcaaagtgattattattgttcataaaaattaaaagtcgaagttctgtaatattttatgatgactattaactagaagaggatgacgc |
401 |
Q |
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| T |
35117242 |
tcagtgatcaaagtgactattattgttcataaaaattaaaagtcgaagttctgtaatattttatgacgactattaactagaa-aggatgacgc |
35117333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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