View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4273_low_3 (Length: 395)
Name: NF4273_low_3
Description: NF4273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4273_low_3 |
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| [»] scaffold2079 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 380
Target Start/End: Complemental strand, 6346738 - 6346388
Alignment:
| Q |
30 |
ttggtaactcttctactttgaagttattaaatatactattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaa |
129 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6346738 |
ttggtaactcttctacattcaagttattaaatatactattgctaacattttattttcttgaatttattcaaccctttctagcttgaatgaagttggaaaa |
6346639 |
T |
|
| Q |
130 |
ctatttggccaattttttgagctattgtttgcaataatcgggtttgcaacaacaaatgcaagtatggagaaatcaccacttctgtttgctttagttttca |
229 |
Q |
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||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| || ||||||||||||||| | ||||| ||||||| |
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| T |
6346638 |
ctattaagccaattttttgagctattgttcgcaataattgggtttgcaacaacgaatacaagtatcgaaaaatcaccacttctgatggctttggttttca |
6346539 |
T |
|
| Q |
230 |
tggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttttacttggaag |
329 |
Q |
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| T |
6346538 |
tggttgctctttactacttggttttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggttattgttttacttggaag |
6346439 |
T |
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| Q |
330 |
tgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
380 |
Q |
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| T |
6346438 |
tgttgtttcagttctagctttgatgatgatttctcctacaattgcttggat |
6346388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 220 - 380
Target Start/End: Original strand, 6219562 - 6219722
Alignment:
| Q |
220 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttt |
319 |
Q |
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| T |
6219562 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccattcatgatggttattgttt |
6219661 |
T |
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| Q |
320 |
tacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
380 |
Q |
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| T |
6219662 |
tacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggat |
6219722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 82 - 339
Target Start/End: Original strand, 6242588 - 6242845
Alignment:
| Q |
82 |
ttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgcaacaa |
181 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||| |
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| T |
6242588 |
ttttcttgaattcattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagctattgtttgcaatcgtcgggtttgcagcaa |
6242687 |
T |
|
| Q |
182 |
caaatgcaagtatggagaaatcaccacttctgtttgctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattca |
281 |
Q |
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| T |
6242688 |
tgaatacaagcaacggaaaatctctactgatgatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttca |
6242787 |
T |
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| Q |
282 |
catcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttca |
339 |
Q |
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|||||| || |||||||||| ||||||||| ||| ||||||||||||||||| ||||| |
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| T |
6242788 |
catcaatagtttccttccatacatgatggtaattcttttacttggaagtgttatttca |
6242845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 380
Target Start/End: Complemental strand, 6333434 - 6333271
Alignment:
| Q |
217 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
316 |
Q |
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|||||||||||||||||| |||||| || | ||| |||||||||| | ||| ||| || ||||||||||||| ||| |||| | || |||| | ||| |
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| T |
6333434 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaagagtttctttccttccaagatgatcattc |
6333335 |
T |
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| Q |
317 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
380 |
Q |
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| T |
6333334 |
ttttacttggaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttggat |
6333271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 6326107 - 6326013
Alignment:
| Q |
82 |
ttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgc |
176 |
Q |
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| T |
6326107 |
ttttcttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgc |
6326013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 6333599 - 6333490
Alignment:
| Q |
66 |
tattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaata |
165 |
Q |
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|||| ||||||||| |||| |||||||| |||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
6333599 |
tattcctaacatttacttt-cttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatc |
6333501 |
T |
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| Q |
166 |
atcgggtttgc |
176 |
Q |
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||||||||||| |
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| T |
6333500 |
atcgggtttgc |
6333490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 380
Target Start/End: Complemental strand, 6325957 - 6325794
Alignment:
| Q |
217 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
316 |
Q |
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|||||||||||||||||| |||||| || | ||| |||||||||| | |||| | | || |||||||||||||| ||| |||| | || |||| | ||| |
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| T |
6325957 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtaacaatgatacatattcacatcaagagattcattccttccaagatgatcattc |
6325858 |
T |
|
| Q |
317 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
380 |
Q |
| |
|
||||||||||||||||||||||| || | ||||| ||| | ||||| | |||||||| ||||| |
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| T |
6325857 |
ttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggat |
6325794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 6219395 - 6219457
Alignment:
| Q |
59 |
aatatactattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaag |
121 |
Q |
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| T |
6219395 |
aatatactattcctaacatttgatatttttgaattgattcaactctttctagcttgactgaag |
6219457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 823 - 909
Alignment:
| Q |
91 |
atttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgca |
177 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||||||||| |
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| T |
823 |
atttattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgca |
909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 380
Target Start/End: Original strand, 992 - 1094
Alignment:
| Q |
278 |
ttcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttg |
377 |
Q |
| |
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|||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||| || | || |||||| | ||||| | ||||||||||| |
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| T |
992 |
ttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaattgcttg |
1091 |
T |
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| Q |
378 |
gat |
380 |
Q |
| |
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||| |
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| T |
1092 |
gat |
1094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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