View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4273_low_4 (Length: 374)
Name: NF4273_low_4
Description: NF4273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4273_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 1350834 - 1351183
Alignment:
| Q |
15 |
aagaagagagtgagtgtctcaaatggctagattcacaggaagaaaattctgttctctatgtgaattttggaagtgttatagtcatgaagtataaccagct |
114 |
Q |
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| T |
1350834 |
aagaagagagtgagtgtctcaaatggctagattcacaggaagaaaattctgttctctatgtgaattttggaagtgttatagtcatgaagtataaccagct |
1350933 |
T |
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| Q |
115 |
agttgaattggcatggggattagcaaatagtaagaaaaagttcttgtgggtgattaggcctgatttagttaagggtgaaagtgaaacattgcttgtgcca |
214 |
Q |
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| T |
1350934 |
agttgaattggcatggggattagcaaatagcaagaaaaagttcttgtgggtgattaggcctgatttagttaagggtgaaagtgaaacattgcttgtgcca |
1351033 |
T |
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| Q |
215 |
caagaaattgtggaagaaaccaaagatagaggactaatggtaggttggtgtccacaagagaaagttctaaagcacaaagcagtgggagggtttttgagtc |
314 |
Q |
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| T |
1351034 |
caagaaattgtggaagaaaccaaagatagaggactaatggtaggttggtgtccacaagagaaagttctaaagcacaaagcagtgggagggtttttgagtc |
1351133 |
T |
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| Q |
315 |
actgtggttggaattcaacaattgaaagtataagtaatggggtgcctttg |
364 |
Q |
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| T |
1351134 |
actgtggttggaattcaacaattgaaagtataagtaatggggtgcctttg |
1351183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 4560896 - 4560855
Alignment:
| Q |
238 |
agatagaggactaatggtaggttggtgtccacaagagaaagt |
279 |
Q |
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| T |
4560896 |
agatagaggactaatagcaagttggtgtccacaagagaaagt |
4560855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 4574698 - 4574657
Alignment:
| Q |
238 |
agatagaggactaatggtaggttggtgtccacaagagaaagt |
279 |
Q |
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| T |
4574698 |
agatagaggactaatagcaagttggtgtccacaagagaaagt |
4574657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 1965204 - 1965248
Alignment:
| Q |
299 |
ggagggtttttgagtcactgtggttggaattcaacaattgaaagt |
343 |
Q |
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| T |
1965204 |
ggagggttcttgagtcactgtggttggaactcaacccttgaaagt |
1965248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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