View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4273_low_5 (Length: 354)

Name: NF4273_low_5
Description: NF4273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4273_low_5
NF4273_low_5
[»] chr4 (5 HSPs)
chr4 (17-354)||(31245712-31246049)
chr4 (211-270)||(31477688-31477747)
chr4 (211-270)||(31483545-31483604)
chr4 (211-257)||(31502824-31502870)
chr4 (211-257)||(31527707-31527753)
[»] chr6 (6 HSPs)
chr6 (17-336)||(13609781-13610103)
chr6 (211-257)||(33058867-33058913)
chr6 (211-257)||(33389376-33389422)
chr6 (211-257)||(33643332-33643378)
chr6 (211-257)||(31561539-31561585)
chr6 (211-257)||(33411256-33411302)
[»] chr8 (1 HSPs)
chr8 (44-227)||(6472455-6472638)
[»] chr2 (1 HSPs)
chr2 (211-257)||(17439558-17439604)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 31246049 - 31245712
Alignment:
Q  17 aaaaatggtaagcaataatttgatctcaataactattttaccatgtattctgagataacattgtgtacatccttgtagtcccacaacctgttccactttc 116  Q
    ||||||||||||||||||| | || | ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  31246049 aaaaatggtaagcaataatcttattttaataactattttaccatgttttctgatataacattgtggacatccttgtagtcccacatcctgttccactttc 31245950  T
Q  117 ttggctctttgggtgatttttctctaacgatactcttgcctagttctttgaacaaaccatgcataaaaattctccccttctcacaagttatgaatgattt 216  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||    
T  31245949 ttggttctttgggtgatttttccctaacgatactcttgcctagttctttgaacaaatcatgcataaaaattctcccgttctcacaggttatgaatgactt 31245850  T
Q  217 atcaatgagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaactctcttcacatacgtctcctctttttcataaaagaaacatgcaata 316  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||  ||||| |||||||||||| ||||||    
T  31245849 atcaacaagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaactttattcacgtatgtctccgattttttataaaagaaacaagcaata 31245750  T
Q  317 tctagaaagatgtccttttccgtatcatctaatccatc 354  Q
    |||| ||| || |||||||| ||||| |||| ||||||    
T  31245749 tctaaaaatatatccttttctgtatcctctagtccatc 31245712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 31477747 - 31477688
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaac 270  Q
    |||||||||||||||||||||||| ||||| || | ||||||||||| | ||| ||||||    
T  31477747 tgatttatcaatgagaactcttaatccaatatcggcatgaaatccacaacaatttaaaac 31477688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 31483604 - 31483545
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaac 270  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||| | ||| ||||||    
T  31483604 tgatttatcaacaagaactcttaatccaatatcaggatgaaatccacaacaatttaaaac 31483545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 31502870 - 31502824
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 257  Q
    |||||||||||||||||||||||| || || |||| |||||||||||    
T  31502870 tgatttatcaatgagaactcttaatcctatatcagcatgaaatccac 31502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 31527707 - 31527753
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 257  Q
    |||||| ||||||||||||||||| ||||| |||| |||||||||||    
T  31527707 tgatttgtcaatgagaactcttaatccaatatcagcatgaaatccac 31527753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 13610103 - 13609781
Alignment:
Q  17 aaaaatggtaagcaataatttgatctcaataactattttaccatgtattctgagataacattgtgtacatccttgtagtcccacaacctgttccactttc 116  Q
    ||||||||  ||||||||||| || || |||| ||||||||||| | ||| |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  13610103 aaaaatggcgagcaataatttaatttcgataattattttaccattttttccgagataacattgtggacatccttgtggtcccacaacctgttccactttc 13610004  T
Q  117 ttggctctttgggtgatttttctctaacgatactcttgcctagttctttgaacaaaccatgcataaaaattct---ccccttctcacaagttatgaatga 213  Q
    |||| |||||||||||||||||| ||| ||||||| |||| |||||||| ||||||| ||||||| ||||  |      | || || | ||||| |||||    
T  13610003 ttggttctttgggtgatttttctttaatgatactcctgccaagttcttttaacaaacgatgcatagaaatcgtagaaaacctcccataggttattaatga 13609904  T
Q  214 tttatcaatgagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaactctcttcacatacgtctc-ctctttttcataaaagaaacatgc 312  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| || ||||| |||| | | || ||||||||| ||    
T  13609903 tttatcaaagagaactcttaagccaatttcgggatgaaatccacgaaaatctaaaactttcttcacgtatgtctcgctctctct-atcaaagaaacaagc 13609805  T
Q  313 aatatctagaaagatgtccttttc 336  Q
    |||||| ||||| || ||||||||    
T  13609804 aatatccagaaaaatctccttttc 13609781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 33058867 - 33058913
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 257  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||    
T  33058867 tgatttatcaatgagaactcttaatccaatatcagcatgaaatccac 33058913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 33389376 - 33389422
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 257  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||    
T  33389376 tgatttatcaatgagaactcttaatccaatatcagcatgaaatccac 33389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 33643378 - 33643332
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 257  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||    
T  33643378 tgatttatcaatgagaactcttaacccaatatcagcatgaaatccac 33643332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 31561585 - 31561539
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 257  Q
    ||||||||||| |||||||||||| ||||| |||| |||||||||||    
T  31561585 tgatttatcaaggagaactcttaatccaatatcagcatgaaatccac 31561539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 33411256 - 33411302
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 257  Q
    |||||||||||||||||||| ||| ||||| |||| |||||||||||    
T  33411256 tgatttatcaatgagaactcctaatccaatatcagcatgaaatccac 33411302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 6472455 - 6472638
Alignment:
Q  44 aataactattttaccatgtattctgagataacattgtgtacatccttgtagtcccacaacctgttccactttcttggctctttgggtgatttttctctaa 143  Q
    |||||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||   ||||||||||||||    
T  6472455 aataactactttaccatgttttctgagataacattgtgaacatctttgtagtcccacaaccagttccactttcttggttctttcattgatttttctctaa 6472554  T
Q  144 cgatactcttgcctagttctttgaacaaaccatgcataaaaattctccccttctcacaagttatgaatgatttatcaatgagaa 227  Q
    |||| ||||| || ||||||||||||||| |||||||| ||||||||||| |||| |  |||||||||||||||||||| ||||    
T  6472555 cgatgctcttcccaagttctttgaacaaatcatgcatacaaattctccccatctcgctggttatgaatgatttatcaatcagaa 6472638  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 17439604 - 17439558
Alignment:
Q  211 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 257  Q
    |||||||| ||||||||||||||| ||||| |||| |||||||||||    
T  17439604 tgatttattaatgagaactcttaatccaatatcagcatgaaatccac 17439558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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