View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4274-Insertion-1 (Length: 194)
Name: NF4274-Insertion-1
Description: NF4274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4274-Insertion-1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 45672966 - 45672773
Alignment:
| Q |
1 |
gttatcataggaaccatcattgctacacttatcttactttttctcttcataacgttagtacgcggcttcacaaactcgttaagggcagactcatcaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45672966 |
gttatcataggaaccatcattgcaacgcttatcttactttttctcttcataacgttaatacgcggcttcacaaactcgttaagggcagactcatcaaaat |
45672867 |
T |
|
| Q |
101 |
gtgaaagtgacaaaggtatcaaccctcaacttctcaaaactttcccaatcttactttactctaccatcatcaaacattttaatgaaagtgttga |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45672866 |
gtgaaagtgacaaaggtatcaaccctcaacttctcaaaactttcccaatcttactttactctaccatcatcaaacattttaatgaaagtattga |
45672773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University