View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4274-Insertion-2 (Length: 160)

Name: NF4274-Insertion-2
Description: NF4274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4274-Insertion-2
NF4274-Insertion-2
[»] chr8 (1 HSPs)
chr8 (12-131)||(566706-566825)
[»] scaffold0515 (1 HSPs)
scaffold0515 (128-160)||(9074-9106)
[»] scaffold0152 (2 HSPs)
scaffold0152 (128-160)||(26695-26727)
scaffold0152 (128-160)||(35471-35503)
[»] scaffold0055 (6 HSPs)
scaffold0055 (128-160)||(15373-15405)
scaffold0055 (128-160)||(39753-39785)
scaffold0055 (128-160)||(49001-49033)
scaffold0055 (128-160)||(60327-60359)
scaffold0055 (128-160)||(64624-64656)
scaffold0055 (128-160)||(73601-73633)
[»] scaffold0052 (6 HSPs)
scaffold0052 (128-160)||(14711-14743)
scaffold0052 (128-160)||(23526-23558)
scaffold0052 (128-160)||(32418-32450)
scaffold0052 (128-160)||(37272-37304)
scaffold0052 (128-160)||(45920-45952)
scaffold0052 (128-160)||(60599-60631)
[»] scaffold0021 (2 HSPs)
scaffold0021 (128-160)||(41425-41457)
scaffold0021 (132-160)||(89052-89080)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 566706 - 566825
Alignment:
Q  12 gaaggaacatgtagttcacgtttgatggaagaatttcattcctatttggagcataacatgacaacaaatcggttagctaacttgggatgctcttgtgaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  566706 gaaggaacatgtagttcacgtttgatggaagaatttcattcctatttggagcataacatgacaacaaataggttagctaacttgggatgctcttgtgaca 566805  T
Q  112 ctagtacatatgtcctgatc 131  Q
    ||||||||||||||||||||    
T  566806 ctagtacatatgtcctgatc 566825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 9106 - 9074
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  9106 gatcggggtcggtcggcggtgcaacccacaaga 9074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 33; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 26727 - 26695
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  26727 gatcggggtcggtcggcggtgcaacccacaaga 26695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 35503 - 35471
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  35503 gatcggggtcggtcggcggtgcaacccacaaga 35471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 33; Significance: 0.0000000008; HSPs: 6)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 15405 - 15373
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  15405 gatcggggtcggtcggcggtgcaacccacaaga 15373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 39753 - 39785
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  39753 gatcggggtcggtcggcggtgcaacccacaaga 39785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 49001 - 49033
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  49001 gatcggggtcggtcggcggtgcaacccacaaga 49033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 60327 - 60359
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  60327 gatcggggtcggtcggcggtgcaacccacaaga 60359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 64624 - 64656
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  64624 gatcggggtcggtcggcggtgcaacccacaaga 64656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 73633 - 73601
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  73633 gatcggggtcggtcggcggtgcaacccacaaga 73601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 33; Significance: 0.0000000008; HSPs: 6)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 14711 - 14743
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  14711 gatcggggtcggtcggcggtgcaacccacaaga 14743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 23526 - 23558
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  23526 gatcggggtcggtcggcggtgcaacccacaaga 23558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 32450 - 32418
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  32450 gatcggggtcggtcggcggtgcaacccacaaga 32418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 37304 - 37272
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  37304 gatcggggtcggtcggcggtgcaacccacaaga 37272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 45920 - 45952
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  45920 gatcggggtcggtcggcggtgcaacccacaaga 45952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 60599 - 60631
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||||||    
T  60599 gatcggggtcggtcggcggtgcaacccacaaga 60631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 41425 - 41457
Alignment:
Q  128 gatcggggtcggtcggcggtgcaacccacaaga 160  Q
    ||||||||||||||||||| |||||||||||||    
T  41425 gatcggggtcggtcggcggagcaacccacaaga 41457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 89052 - 89080
Alignment:
Q  132 ggggtcggtcggcggtgcaacccacaaga 160  Q
    |||||||||||||||||||||||||||||    
T  89052 ggggtcggtcggcggtgcaacccacaaga 89080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University