View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4274_high_1 (Length: 526)
Name: NF4274_high_1
Description: NF4274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4274_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 46874507 - 46875017
Alignment:
| Q |
1 |
tgaaccaaaaatatggactaaattttagtacttaaaatatggactgaattgtatttagccccttaaattgaacaacttaagtcaatttagtcatttttca |
100 |
Q |
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| T |
46874507 |
tgaaccaaaaatatggactaaattttagtacttaaaaaatggactgaattgtatttagccccttaaattgaacaacttaagtcaatttagtcatttttca |
46874606 |
T |
|
| Q |
101 |
aatttacggccacaattttgaagattctatgtttatcttgatgcatcaagagactattcaagtttatgctatgtcttttgttgatttcaatagatgttaa |
200 |
Q |
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| T |
46874607 |
aatttacggccacaattttgaagattctatgtttatcttgatgcatcaagagactattcaagtttatgctatgtcttttgttgatttcaatagatgttaa |
46874706 |
T |
|
| Q |
201 |
ttgaagagatattaatgtagaaagactaagcctgtgtttgtttgtgcggcacatatccactagacgcacgtcttgaaagaagctacttagcttttacttt |
300 |
Q |
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| T |
46874707 |
ttgaagagatattaatgtagaaagactaagcttgtgtttgtttgtgcggcacatatccaagagacgcacgtcttgaaagaagctacttagcttttacttt |
46874806 |
T |
|
| Q |
301 |
ttcactgtgtacatgggtttgaaacgtgcatttggcctcgaagacgtcaaaccaaacatagcctaaattgatagagtttctttaattgaaggaactaatc |
400 |
Q |
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| T |
46874807 |
ttcactgtgta-atgggtttgaaacgtgcatttggcctcgaagacgtcaaaccaaacacagcctaaattgatagagtttctttaattgaaggaa-----c |
46874900 |
T |
|
| Q |
401 |
tgttattttacaaatttaaaagataaaaatacttgacttttacaattttgaggactaaaatgtcgatttacttnnnnnnntatgtgaacactctttcagg |
500 |
Q |
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| T |
46874901 |
tgttattttacaaatttaaaagataaaaatacttgacttttacaattttgaggactaaaatgtcgatttacttaaaaaaatatgtgaacgctctttcaga |
46875000 |
T |
|
| Q |
501 |
caacttctaaagtataa |
517 |
Q |
| |
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||||||||||||||||| |
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| T |
46875001 |
caacttctaaagtataa |
46875017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 15504756 - 15504673
Alignment:
| Q |
80 |
agtcaatttagtcat-ttttcaaatttacggccacaattttgaagattctatgtttatcttgatgcatcaagagactattcaagtt |
164 |
Q |
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| T |
15504756 |
agtcaatttagtcatattttcaaatttagcaccacaattttaaagttt--atgtttgtcttgatgcaacaagagactatttaagtt |
15504673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 13054405 - 13054487
Alignment:
| Q |
86 |
tttagtcatttttcaaatttacggccacaattttgaagattctatgtttatcttgatgcatcaagagactattcaagtttatg |
168 |
Q |
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| T |
13054405 |
tttagtcattttttaaattttatcccacaattttaaaggttctatgcttattttgatgcagcataagactattcaagtctatg |
13054487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 42781250 - 42781206
Alignment:
| Q |
60 |
cccttaaattgaacaacttaagtcaatttagtcatttttcaaatt |
104 |
Q |
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| T |
42781250 |
cccttaaattgaacaatgttagtcaatttattcatttttcaaatt |
42781206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 15801650 - 15801606
Alignment:
| Q |
114 |
aattttgaagattctatgtttatcttgatgcatcaagagactatt |
158 |
Q |
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| T |
15801650 |
aattttaaaggttctatgtttgtcttgatgcatcaaaagactatt |
15801606 |
T |
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