View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4274_high_3 (Length: 318)

Name: NF4274_high_3
Description: NF4274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4274_high_3
NF4274_high_3
[»] chr1 (1 HSPs)
chr1 (10-318)||(35043057-35043365)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 35043057 - 35043365
Alignment:
Q  10 tcatcatatctctcatgattttgtccattttttcacccaatgtgaatgtgagttttcttctcttttttcaccccacacccaaaaattcaaataaattgta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35043057 tcatcatatctctcatgattttgtccattttttcacccaatgtgaatgtgagttttcttctcttttttctccccacacccaaaaattcaaataaattgta 35043156  T
Q  110 taaaaacatgtagttgaaatttataatttttcatgattaggatgtaaatggagctgcagataccatgcaaatgatgatgatgaatgaaggcaggaggaaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35043157 taaaaacatgtagttgaaatttataatttttcatgattaggaggtaaatggagctgcagataccatgcaaatgatgatgatgaatgaaggcaggaggaaa 35043256  T
Q  210 ttgggtgctttccagatatgtgcaatgtgcacttgctgtggtggtgccaaagggttgtgcttggcctctccttgttgctatgtcttcacatgtaaccttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35043257 ttgggtgctttccagatatgtgcaatgtgcacttgctgtggtggtgccaaagggttgtgcttggcctctccttgttgctatgtcttcacatgtaaccttc 35043356  T
Q  310 caaataagc 318  Q
    |||||||||    
T  35043357 caaataagc 35043365  T

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