View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4274_high_6 (Length: 248)
Name: NF4274_high_6
Description: NF4274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4274_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 2796760 - 2796898
Alignment:
| Q |
97 |
gtgtacatattaatactttcctttctggaagtgcttaaattcatttttgttatattctatagtaagtagaagctttttgaactaatgctgcttcctgctg |
196 |
Q |
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| T |
2796760 |
gtgtatatattaatactttcctttttggaagtgct-aaatttatttttgttatattgcatagtgagtagaagctttttgaactaatgctgcttcctgctg |
2796858 |
T |
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| Q |
197 |
caatatttttattaattttttagttagagtttgttagtat |
236 |
Q |
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| T |
2796859 |
caatatttttattatctttttagtgtgagtttgttagtat |
2796898 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 2796652 - 2796737
Alignment:
| Q |
17 |
aagaagtttgtgctaaatgcctataatatataagggctgcttttggtatcagccactcatgcttaaaaagaaggcatggagtgtac |
102 |
Q |
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| T |
2796652 |
aagaagtttgtgctaaatgcctataatatataagggctgcttttggtatcagccactcatgctaaaaaagaaggcatggagtgtac |
2796737 |
T |
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