View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4274_low_10 (Length: 215)
Name: NF4274_low_10
Description: NF4274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4274_low_10 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 18373287 - 18373070
Alignment:
| Q |
1 |
aaccttgcatacaatggtg--ggttctctctccatgttccttaaaatatgtcttaggatatatgtcaataatcttgtaataaaatggcttatagctgatc |
98 |
Q |
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| T |
18373287 |
aaccttgcatacaatggtgtgggttctctctccatgttccttaaaatatgtcttgggatatacgtcaataatcttgtaataaaatggcttatacctcatc |
18373188 |
T |
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| Q |
99 |
agaggggaatgaattctctcc-nnnnnnnnaattgttacatctcaaccacgcacacattatcctctttactttataatattatatctatttctctctctc |
197 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18373187 |
agaggggaatgaattctctccttttttctcaattgttacatctcaaccacgcactcattatcctctttactttataatattatatctatttttctctctc |
18373088 |
T |
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| Q |
198 |
atatttaatggtgtagat |
215 |
Q |
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| T |
18373087 |
atatttaatgatgtagat |
18373070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 46639736 - 46639942
Alignment:
| Q |
1 |
aaccttgcatacaatggtgggttctctctccatgttccttaaaatatgtcttaggatatatgtcaataatcttgtaataaaatggcttatagctgatcag |
100 |
Q |
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| T |
46639736 |
aaccttgcataaaatggtgggttctctctc-atgttccttaaaatatgtcttgggat------caagaatcttgtaataaaatggcttatacctcataag |
46639828 |
T |
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| Q |
101 |
aggggaatgaattctctccnnnnnnnnaattgttacatctcaaccacgcacacattatcctctttactttataatattatatctatttctctctctcata |
200 |
Q |
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| T |
46639829 |
aggggaatgaattctctccttttctc-aattgctacatctcaaccacgcactcaatatcctcttttctttataatattatatctacttttctctctgata |
46639927 |
T |
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| Q |
201 |
tttaatggtgtagat |
215 |
Q |
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| T |
46639928 |
tttaatggtgtagat |
46639942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 46620956 - 46621039
Alignment:
| Q |
8 |
catacaatggtgggttctctctccatgttccttaaaatatgtcttaggatatatgtcaataatcttgtaataaaatggcttata |
91 |
Q |
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| T |
46620956 |
catacaatggtgggttctctctacacgttcctcaaaatatgtcttggtatatatgccaataatattgtaataaaatggcttata |
46621039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 35012164 - 35012088
Alignment:
| Q |
139 |
ctcaaccacgcacacattatcctctttactttataatattatatctatttctctctctcatatttaatggtgtagat |
215 |
Q |
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| T |
35012164 |
ctcaaccacacactcaatatcctctaatctttataatattatatctttttctctctctcatatttaatggtgtagat |
35012088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 616441 - 616528
Alignment:
| Q |
128 |
aattgttacatctcaaccacgcacacattatcctctttactttataatattatatctatttctctctctcatatttaatggtgtagat |
215 |
Q |
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| T |
616441 |
aattgttacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgtttaatagtgtagat |
616528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 5179271 - 5179356
Alignment:
| Q |
128 |
aattgttacatctcaaccacgcacacattatcctctttactttataatattatatctatttctctctctcatatttaatggtgtagat |
215 |
Q |
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||||||||||||||||||||||| | ||| |||||| ||||| ||| |||||||| || | |||||||| ||||||| ||||||| |
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| T |
5179271 |
aattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatctctt--tttctctcatgtttaatgatgtagat |
5179356 |
T |
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