View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4274_low_5 (Length: 300)
Name: NF4274_low_5
Description: NF4274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4274_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 7611379 - 7611174
Alignment:
| Q |
1 |
aaagtatactctgatggaacgttattttgaatgctcattttagaaacctattagagagcagtttagcatttggttagaaataagtgggggagcagtacaa |
100 |
Q |
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| T |
7611379 |
aaagtatactctgatggaacgttattttgaatgctcattttagaaacctattagagagcagtttagcatttggttagaaataagtgggggagcagtacaa |
7611280 |
T |
|
| Q |
101 |
ataataaattgcaactgtttaaccacttggagtataactcttacaaccattgtgagtaaaatcagaatgactttgtttgaagtcaatgattgaaatttga |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7611279 |
ataataaattacaactgtttaaccacttggagtataactcttacaaccattgtgagtaaaatcagaatgactttgtttgaagtcaatgattgatatttga |
7611180 |
T |
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| Q |
201 |
ataaaa |
206 |
Q |
| |
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|||||| |
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| T |
7611179 |
ataaaa |
7611174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 7611121 - 7611093
Alignment:
| Q |
259 |
aagaaagaaatataacatgcatataagta |
287 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7611121 |
aagaaagaaatataacatgcatataagta |
7611093 |
T |
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